Hb_003097_200

Information

Type -
Description -
Location Contig3097: 146217-148786
Sequence    

Annotation

kegg
ID rcu:RCOM_1453650
description hypothetical protein
nr
ID XP_002513104.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8VY22
description Protein trichome birefringence-like 38 OS=Arabidopsis thaliana GN=TBL38 PE=2 SV=1
trembl
ID B9RGF2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1453650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000797_030 0.0211851062 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
3 Hb_003893_100 0.060972693 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
4 Hb_000911_050 0.0938761097 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
5 Hb_006637_040 0.0997396271 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
6 Hb_004316_130 0.1003769729 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
7 Hb_001758_120 0.1116234527 - - unnamed protein product [Vitis vinifera]
8 Hb_012368_080 0.1142579228 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
9 Hb_001545_270 0.1147709597 - - laccase, putative [Ricinus communis]
10 Hb_008418_010 0.116862079 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
11 Hb_164283_010 0.1181450608 - - hypothetical protein RCOM_0725500 [Ricinus communis]
12 Hb_000207_340 0.1224294593 transcription factor TF Family: GRAS hypothetical protein POPTR_0013s11930g [Populus trichocarpa]
13 Hb_018591_010 0.1235730805 - - kinase, putative [Ricinus communis]
14 Hb_003177_080 0.1245449684 - - hypothetical protein L484_016032 [Morus notabilis]
15 Hb_001360_060 0.1291540998 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
16 Hb_008727_030 0.1297211995 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000139_500 0.1321581765 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
18 Hb_036069_020 0.1322285538 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
19 Hb_002475_070 0.1330799528 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
20 Hb_000297_180 0.1376921661 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003097_200 Hb_003097_200 Hb_000797_030 Hb_000797_030 Hb_003097_200--Hb_000797_030 Hb_003893_100 Hb_003893_100 Hb_003097_200--Hb_003893_100 Hb_000911_050 Hb_000911_050 Hb_003097_200--Hb_000911_050 Hb_006637_040 Hb_006637_040 Hb_003097_200--Hb_006637_040 Hb_004316_130 Hb_004316_130 Hb_003097_200--Hb_004316_130 Hb_001758_120 Hb_001758_120 Hb_003097_200--Hb_001758_120 Hb_000797_030--Hb_003893_100 Hb_000797_030--Hb_000911_050 Hb_000797_030--Hb_006637_040 Hb_000797_030--Hb_004316_130 Hb_000797_030--Hb_001758_120 Hb_003893_100--Hb_004316_130 Hb_012368_080 Hb_012368_080 Hb_003893_100--Hb_012368_080 Hb_000297_180 Hb_000297_180 Hb_003893_100--Hb_000297_180 Hb_003893_100--Hb_006637_040 Hb_036069_020 Hb_036069_020 Hb_000911_050--Hb_036069_020 Hb_001377_010 Hb_001377_010 Hb_000911_050--Hb_001377_010 Hb_001545_270 Hb_001545_270 Hb_000911_050--Hb_001545_270 Hb_000911_050--Hb_006637_040 Hb_164283_010 Hb_164283_010 Hb_006637_040--Hb_164283_010 Hb_018591_010 Hb_018591_010 Hb_006637_040--Hb_018591_010 Hb_008418_010 Hb_008418_010 Hb_006637_040--Hb_008418_010 Hb_006637_040--Hb_001758_120 Hb_006637_040--Hb_012368_080 Hb_004316_130--Hb_000297_180 Hb_144783_010 Hb_144783_010 Hb_004316_130--Hb_144783_010 Hb_002475_070 Hb_002475_070 Hb_004316_130--Hb_002475_070 Hb_001758_120--Hb_003893_100 Hb_002749_070 Hb_002749_070 Hb_001758_120--Hb_002749_070 Hb_001758_120--Hb_164283_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0199676 0.047281 0.228651 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.633684 0.0738311

CAGE analysis