Hb_003097_210

Information

Type -
Description -
Location Contig3097: 150609-151692
Sequence    

Annotation

kegg
ID rcu:RCOM_1453640
description hypothetical protein
nr
ID XP_012068613.1
description PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
swissprot
ID Q9NRH1
description Yae1 domain-containing protein 1 OS=Homo sapiens GN=YAE1D1 PE=2 SV=1
trembl
ID A0A067L7L5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24499 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32748: 150060-151108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_210 0.0 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
2 Hb_155764_010 0.0638894621 - - -
3 Hb_010560_040 0.0754987689 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
4 Hb_001688_020 0.080842996 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
5 Hb_003226_280 0.0892361644 - - PREDICTED: peter Pan-like protein [Populus euphratica]
6 Hb_000363_200 0.0923397122 - - 40S ribosomal protein S8, putative [Ricinus communis]
7 Hb_000865_070 0.0943971341 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
8 Hb_116898_010 0.0977724543 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
9 Hb_000742_110 0.0977882392 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
10 Hb_181600_010 0.098465396 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
11 Hb_002301_230 0.1014155077 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
12 Hb_148200_010 0.102038718 - - hypothetical protein 33 [Hevea brasiliensis]
13 Hb_001016_090 0.1053667708 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
14 Hb_027073_040 0.1080393552 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
15 Hb_000010_470 0.1088238556 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
16 Hb_012114_040 0.1089275052 - - DNA binding protein, putative [Ricinus communis]
17 Hb_048476_050 0.109735366 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
18 Hb_026048_070 0.110325533 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
19 Hb_009113_050 0.1126453214 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
20 Hb_004678_050 0.1135912509 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_003097_210 Hb_003097_210 Hb_155764_010 Hb_155764_010 Hb_003097_210--Hb_155764_010 Hb_010560_040 Hb_010560_040 Hb_003097_210--Hb_010560_040 Hb_001688_020 Hb_001688_020 Hb_003097_210--Hb_001688_020 Hb_003226_280 Hb_003226_280 Hb_003097_210--Hb_003226_280 Hb_000363_200 Hb_000363_200 Hb_003097_210--Hb_000363_200 Hb_000865_070 Hb_000865_070 Hb_003097_210--Hb_000865_070 Hb_116898_010 Hb_116898_010 Hb_155764_010--Hb_116898_010 Hb_027073_040 Hb_027073_040 Hb_155764_010--Hb_027073_040 Hb_002301_230 Hb_002301_230 Hb_155764_010--Hb_002301_230 Hb_012114_040 Hb_012114_040 Hb_155764_010--Hb_012114_040 Hb_000010_470 Hb_000010_470 Hb_155764_010--Hb_000010_470 Hb_000742_110 Hb_000742_110 Hb_010560_040--Hb_000742_110 Hb_010560_040--Hb_000865_070 Hb_010560_040--Hb_155764_010 Hb_048476_050 Hb_048476_050 Hb_010560_040--Hb_048476_050 Hb_001427_230 Hb_001427_230 Hb_010560_040--Hb_001427_230 Hb_010080_090 Hb_010080_090 Hb_001688_020--Hb_010080_090 Hb_181600_010 Hb_181600_010 Hb_001688_020--Hb_181600_010 Hb_001688_020--Hb_000010_470 Hb_001688_020--Hb_155764_010 Hb_000317_410 Hb_000317_410 Hb_001688_020--Hb_000317_410 Hb_000239_010 Hb_000239_010 Hb_003226_280--Hb_000239_010 Hb_003226_280--Hb_000363_200 Hb_003226_280--Hb_000865_070 Hb_148200_010 Hb_148200_010 Hb_003226_280--Hb_148200_010 Hb_000030_100 Hb_000030_100 Hb_003226_280--Hb_000030_100 Hb_000089_160 Hb_000089_160 Hb_003226_280--Hb_000089_160 Hb_000363_200--Hb_000865_070 Hb_001545_060 Hb_001545_060 Hb_000363_200--Hb_001545_060 Hb_002078_460 Hb_002078_460 Hb_000363_200--Hb_002078_460 Hb_000363_200--Hb_116898_010 Hb_000865_070--Hb_000089_160 Hb_000865_070--Hb_000030_100 Hb_000865_070--Hb_002078_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.58231 2.48997 2.3846 2.6051 3.8059 7.27689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.592 14.8935 12.7239 10.935 2.31061

CAGE analysis