Hb_003101_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig3101: 45602-46375
Sequence    

Annotation

kegg
ID rcu:RCOM_0615030
description NAC domain-containing protein, putative
nr
ID XP_012090474.1
description PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
swissprot
ID A2YMR0
description NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1
trembl
ID R4NEQ6
description NAC transcription factor 020 OS=Jatropha curcas GN=JCGZ_00057 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 68

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003101_020 0.0 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
2 Hb_001439_050 0.053113239 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
3 Hb_108576_020 0.0650717293 - - conserved hypothetical protein [Ricinus communis]
4 Hb_062807_010 0.0724342019 - - hypothetical protein JCGZ_15896 [Jatropha curcas]
5 Hb_002518_040 0.075589492 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
6 Hb_002066_100 0.0850944401 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
7 Hb_000722_030 0.0852585404 - - putative plant disease resistance family protein [Populus trichocarpa]
8 Hb_005892_050 0.0869904799 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
9 Hb_007313_030 0.0875739967 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
10 Hb_174899_010 0.0909567564 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
11 Hb_004602_010 0.0923395717 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
12 Hb_023582_010 0.0924552358 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001153_160 0.0958304164 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
14 Hb_007520_050 0.0981275091 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
15 Hb_004213_010 0.0991078863 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_002391_030 0.0994642394 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
17 Hb_007545_070 0.1011951123 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
18 Hb_027684_010 0.1013928009 - - hypothetical protein RCOM_0504250 [Ricinus communis]
19 Hb_174168_010 0.1025116927 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
20 Hb_004218_140 0.1040910241 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_003101_020 Hb_003101_020 Hb_001439_050 Hb_001439_050 Hb_003101_020--Hb_001439_050 Hb_108576_020 Hb_108576_020 Hb_003101_020--Hb_108576_020 Hb_062807_010 Hb_062807_010 Hb_003101_020--Hb_062807_010 Hb_002518_040 Hb_002518_040 Hb_003101_020--Hb_002518_040 Hb_002066_100 Hb_002066_100 Hb_003101_020--Hb_002066_100 Hb_000722_030 Hb_000722_030 Hb_003101_020--Hb_000722_030 Hb_001439_050--Hb_062807_010 Hb_001439_050--Hb_108576_020 Hb_001439_050--Hb_002518_040 Hb_007313_030 Hb_007313_030 Hb_001439_050--Hb_007313_030 Hb_011671_050 Hb_011671_050 Hb_001439_050--Hb_011671_050 Hb_001153_160 Hb_001153_160 Hb_108576_020--Hb_001153_160 Hb_004213_010 Hb_004213_010 Hb_108576_020--Hb_004213_010 Hb_108576_020--Hb_062807_010 Hb_108576_020--Hb_007313_030 Hb_004602_010 Hb_004602_010 Hb_062807_010--Hb_004602_010 Hb_008304_010 Hb_008304_010 Hb_062807_010--Hb_008304_010 Hb_062807_010--Hb_007313_030 Hb_002518_040--Hb_000722_030 Hb_001258_130 Hb_001258_130 Hb_002518_040--Hb_001258_130 Hb_002518_040--Hb_007313_030 Hb_027684_010 Hb_027684_010 Hb_002518_040--Hb_027684_010 Hb_002066_100--Hb_000722_030 Hb_019053_040 Hb_019053_040 Hb_002066_100--Hb_019053_040 Hb_023582_010 Hb_023582_010 Hb_002066_100--Hb_023582_010 Hb_002066_100--Hb_001258_130 Hb_002066_100--Hb_027684_010 Hb_001511_210 Hb_001511_210 Hb_002066_100--Hb_001511_210 Hb_000722_030--Hb_023582_010 Hb_016297_010 Hb_016297_010 Hb_000722_030--Hb_016297_010 Hb_000722_030--Hb_019053_040 Hb_000722_030--Hb_027684_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0377329 0.692569 0.278363 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0666335 0.313383

CAGE analysis