Hb_003102_040

Information

Type -
Description -
Location Contig3102: 60432-61325
Sequence    

Annotation

kegg
ID rcu:RCOM_0864900
description ESC, putative
nr
ID XP_012089628.1
description PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
swissprot
ID O23620
description AT-hook motif nuclear-localized protein 23 OS=Arabidopsis thaliana GN=AHL23 PE=1 SV=1
trembl
ID A0A067JGC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01738 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003102_040 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
2 Hb_001488_050 0.1833593212 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like [Jatropha curcas]
3 Hb_002495_020 0.2066201466 - - hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]
4 Hb_000011_030 0.2326093126 - - hypothetical protein POPTR_0003s18920g [Populus trichocarpa]
5 Hb_000015_110 0.2326093126 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
6 Hb_000029_040 0.2326093126 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000030_110 0.2326093126 - - -
8 Hb_000034_130 0.2326093126 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_000046_470 0.2326093126 - - glutaredoxin, grx, putative [Ricinus communis]
10 Hb_000058_010 0.2326093126 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_000060_140 0.2326093126 - - -
12 Hb_000070_020 0.2326093126 - - -
13 Hb_000084_300 0.2326093126 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
14 Hb_000152_720 0.2326093126 - - -
15 Hb_000172_600 0.2326093126 - - -
16 Hb_000189_370 0.2326093126 - - cation-transporting atpase plant, putative [Ricinus communis]
17 Hb_000200_250 0.2326093126 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000204_010 0.2326093126 - - hypothetical protein POPTR_0004s13450g [Populus trichocarpa]
19 Hb_000215_270 0.2326093126 - - -
20 Hb_000221_020 0.2326093126 - - -

Gene co-expression network

sample Hb_003102_040 Hb_003102_040 Hb_001488_050 Hb_001488_050 Hb_003102_040--Hb_001488_050 Hb_002495_020 Hb_002495_020 Hb_003102_040--Hb_002495_020 Hb_000011_030 Hb_000011_030 Hb_003102_040--Hb_000011_030 Hb_000015_110 Hb_000015_110 Hb_003102_040--Hb_000015_110 Hb_000029_040 Hb_000029_040 Hb_003102_040--Hb_000029_040 Hb_000030_110 Hb_000030_110 Hb_003102_040--Hb_000030_110 Hb_001488_050--Hb_002495_020 Hb_000046_130 Hb_000046_130 Hb_001488_050--Hb_000046_130 Hb_002240_030 Hb_002240_030 Hb_001488_050--Hb_002240_030 Hb_020805_020 Hb_020805_020 Hb_001488_050--Hb_020805_020 Hb_001433_010 Hb_001433_010 Hb_001488_050--Hb_001433_010 Hb_002392_060 Hb_002392_060 Hb_001488_050--Hb_002392_060 Hb_002495_020--Hb_000046_130 Hb_002495_020--Hb_002240_030 Hb_002495_020--Hb_020805_020 Hb_002495_020--Hb_001433_010 Hb_002495_020--Hb_002392_060 Hb_000011_030--Hb_000015_110 Hb_000011_030--Hb_000029_040 Hb_000011_030--Hb_000030_110 Hb_000034_130 Hb_000034_130 Hb_000011_030--Hb_000034_130 Hb_000046_470 Hb_000046_470 Hb_000011_030--Hb_000046_470 Hb_000058_010 Hb_000058_010 Hb_000011_030--Hb_000058_010 Hb_000011_030--Hb_000015_110 Hb_000011_030--Hb_000029_040 Hb_000011_030--Hb_000030_110 Hb_000011_030--Hb_000034_130 Hb_000011_030--Hb_000046_470 Hb_000011_030--Hb_000058_010 Hb_000011_030--Hb_000015_110 Hb_000011_030--Hb_000029_040 Hb_000011_030--Hb_000030_110 Hb_000011_030--Hb_000034_130 Hb_000011_030--Hb_000046_470 Hb_000011_030--Hb_000058_010 Hb_000011_030--Hb_000015_110 Hb_000011_030--Hb_000029_040 Hb_000011_030--Hb_000030_110 Hb_000011_030--Hb_000034_130 Hb_000011_030--Hb_000046_470 Hb_000011_030--Hb_000058_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.159393 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0185188 0

CAGE analysis