Hb_003106_010

Information

Type -
Description -
Location Contig3106: 6988-12019
Sequence    

Annotation

kegg
ID rcu:RCOM_1512840
description Microtubule-associated protein TORTIFOLIA1, putative
nr
ID XP_012080157.1
description PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
swissprot
ID Q9T041
description Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2
trembl
ID A0A067KFY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11541 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32865: 6791-11690
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_010 0.0 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
2 Hb_141939_010 0.1149260422 - - PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X1 [Jatropha curcas]
3 Hb_007064_040 0.1334983109 - - hypothetical protein RCOM_0254640 [Ricinus communis]
4 Hb_000836_630 0.1403939078 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
5 Hb_011639_050 0.1417113926 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011287_090 0.1426014297 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
7 Hb_001946_280 0.1447522476 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003060_070 0.1452498849 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
9 Hb_057183_040 0.1461807326 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
10 Hb_000034_140 0.1470607115 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X3 [Jatropha curcas]
11 Hb_002326_050 0.1507817561 - - PREDICTED: uncharacterized protein LOC105633701 [Jatropha curcas]
12 Hb_135810_010 0.1509840815 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
13 Hb_001846_060 0.1528790439 - - hypothetical protein RCOM_0992860 [Ricinus communis]
14 Hb_008453_150 0.156470941 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
15 Hb_000258_080 0.1588572223 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
16 Hb_002025_230 0.1602146677 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
17 Hb_014568_030 0.160430777 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
18 Hb_000742_250 0.1604573915 - - Tubulin beta-6 chain [Gossypium arboreum]
19 Hb_005280_010 0.1615938782 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
20 Hb_002874_070 0.1622579737 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]

Gene co-expression network

sample Hb_003106_010 Hb_003106_010 Hb_141939_010 Hb_141939_010 Hb_003106_010--Hb_141939_010 Hb_007064_040 Hb_007064_040 Hb_003106_010--Hb_007064_040 Hb_000836_630 Hb_000836_630 Hb_003106_010--Hb_000836_630 Hb_011639_050 Hb_011639_050 Hb_003106_010--Hb_011639_050 Hb_011287_090 Hb_011287_090 Hb_003106_010--Hb_011287_090 Hb_001946_280 Hb_001946_280 Hb_003106_010--Hb_001946_280 Hb_141939_010--Hb_000836_630 Hb_000034_140 Hb_000034_140 Hb_141939_010--Hb_000034_140 Hb_141939_010--Hb_011287_090 Hb_141939_010--Hb_007064_040 Hb_000139_380 Hb_000139_380 Hb_141939_010--Hb_000139_380 Hb_007064_040--Hb_000836_630 Hb_000761_020 Hb_000761_020 Hb_007064_040--Hb_000761_020 Hb_001100_050 Hb_001100_050 Hb_007064_040--Hb_001100_050 Hb_006816_390 Hb_006816_390 Hb_007064_040--Hb_006816_390 Hb_000699_140 Hb_000699_140 Hb_007064_040--Hb_000699_140 Hb_116349_160 Hb_116349_160 Hb_007064_040--Hb_116349_160 Hb_000836_630--Hb_000761_020 Hb_009048_040 Hb_009048_040 Hb_000836_630--Hb_009048_040 Hb_003609_040 Hb_003609_040 Hb_000836_630--Hb_003609_040 Hb_005754_060 Hb_005754_060 Hb_000836_630--Hb_005754_060 Hb_002874_070 Hb_002874_070 Hb_000836_630--Hb_002874_070 Hb_000369_060 Hb_000369_060 Hb_011639_050--Hb_000369_060 Hb_011639_050--Hb_002874_070 Hb_000497_140 Hb_000497_140 Hb_011639_050--Hb_000497_140 Hb_004440_100 Hb_004440_100 Hb_011639_050--Hb_004440_100 Hb_011639_050--Hb_001946_280 Hb_185467_010 Hb_185467_010 Hb_011639_050--Hb_185467_010 Hb_000049_070 Hb_000049_070 Hb_011287_090--Hb_000049_070 Hb_011287_090--Hb_002874_070 Hb_000077_130 Hb_000077_130 Hb_011287_090--Hb_000077_130 Hb_011287_090--Hb_000139_380 Hb_000236_250 Hb_000236_250 Hb_011287_090--Hb_000236_250 Hb_006935_050 Hb_006935_050 Hb_011287_090--Hb_006935_050 Hb_001946_280--Hb_000369_060 Hb_002740_130 Hb_002740_130 Hb_001946_280--Hb_002740_130 Hb_008453_150 Hb_008453_150 Hb_001946_280--Hb_008453_150 Hb_003060_070 Hb_003060_070 Hb_001946_280--Hb_003060_070 Hb_001946_280--Hb_185467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.5378 3.14488 11.7855 14.1054 36.2336 68.6452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.548 10.3121 56.4113 6.1396 9.52927

CAGE analysis