Hb_003106_040

Information

Type -
Description -
Location Contig3106: 28433-31083
Sequence    

Annotation

kegg
ID rcu:RCOM_1512820
description lipase, putative
nr
ID XP_002511473.1
description lipase, putative [Ricinus communis]
swissprot
ID Q9SU72
description Protein EDS1 OS=Arabidopsis thaliana GN=EDS1 PE=1 SV=1
trembl
ID B9R8Z8
description Lipase, putative OS=Ricinus communis GN=RCOM_1512820 PE=4 SV=1
Gene Ontology
ID GO:0016787
description lipase-like pad4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32868: 30748-31074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_040 0.0 - - lipase, putative [Ricinus communis]
2 Hb_000567_210 0.1085034701 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
3 Hb_002813_050 0.1092273505 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
4 Hb_001610_110 0.1101121693 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
5 Hb_002411_030 0.1106111519 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
6 Hb_027506_020 0.1106662293 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
7 Hb_000179_070 0.1112780597 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
8 Hb_000125_170 0.1125969032 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
9 Hb_000373_150 0.1128205736 - - PREDICTED: protein FAM188A [Jatropha curcas]
10 Hb_003052_140 0.1150832502 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
11 Hb_004109_040 0.1176863274 - - PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]
12 Hb_000336_140 0.1180144143 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000084_030 0.1188494773 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004785_060 0.1205654408 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
15 Hb_000077_070 0.1216762085 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
16 Hb_001621_150 0.1217180899 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
17 Hb_054865_090 0.1218767967 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
18 Hb_000261_220 0.1223629213 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
19 Hb_000140_080 0.1224372636 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
20 Hb_173953_010 0.1241070893 - - hypothetical protein RCOM_1267370 [Ricinus communis]

Gene co-expression network

sample Hb_003106_040 Hb_003106_040 Hb_000567_210 Hb_000567_210 Hb_003106_040--Hb_000567_210 Hb_002813_050 Hb_002813_050 Hb_003106_040--Hb_002813_050 Hb_001610_110 Hb_001610_110 Hb_003106_040--Hb_001610_110 Hb_002411_030 Hb_002411_030 Hb_003106_040--Hb_002411_030 Hb_027506_020 Hb_027506_020 Hb_003106_040--Hb_027506_020 Hb_000179_070 Hb_000179_070 Hb_003106_040--Hb_000179_070 Hb_000732_140 Hb_000732_140 Hb_000567_210--Hb_000732_140 Hb_000859_060 Hb_000859_060 Hb_000567_210--Hb_000859_060 Hb_001623_140 Hb_001623_140 Hb_000567_210--Hb_001623_140 Hb_000203_160 Hb_000203_160 Hb_000567_210--Hb_000203_160 Hb_003052_140 Hb_003052_140 Hb_000567_210--Hb_003052_140 Hb_003055_060 Hb_003055_060 Hb_000567_210--Hb_003055_060 Hb_000000_370 Hb_000000_370 Hb_002813_050--Hb_000000_370 Hb_002813_050--Hb_000859_060 Hb_004785_060 Hb_004785_060 Hb_002813_050--Hb_004785_060 Hb_012395_220 Hb_012395_220 Hb_002813_050--Hb_012395_220 Hb_001141_390 Hb_001141_390 Hb_002813_050--Hb_001141_390 Hb_012807_050 Hb_012807_050 Hb_002813_050--Hb_012807_050 Hb_001610_110--Hb_001623_140 Hb_052764_050 Hb_052764_050 Hb_001610_110--Hb_052764_050 Hb_004324_340 Hb_004324_340 Hb_001610_110--Hb_004324_340 Hb_001288_080 Hb_001288_080 Hb_001610_110--Hb_001288_080 Hb_000621_080 Hb_000621_080 Hb_001610_110--Hb_000621_080 Hb_086639_070 Hb_086639_070 Hb_001610_110--Hb_086639_070 Hb_000983_090 Hb_000983_090 Hb_002411_030--Hb_000983_090 Hb_005137_050 Hb_005137_050 Hb_002411_030--Hb_005137_050 Hb_005541_010 Hb_005541_010 Hb_002411_030--Hb_005541_010 Hb_001728_050 Hb_001728_050 Hb_002411_030--Hb_001728_050 Hb_000130_240 Hb_000130_240 Hb_002411_030--Hb_000130_240 Hb_005675_040 Hb_005675_040 Hb_002411_030--Hb_005675_040 Hb_001828_130 Hb_001828_130 Hb_027506_020--Hb_001828_130 Hb_003752_100 Hb_003752_100 Hb_027506_020--Hb_003752_100 Hb_000140_070 Hb_000140_070 Hb_027506_020--Hb_000140_070 Hb_076693_020 Hb_076693_020 Hb_027506_020--Hb_076693_020 Hb_027506_020--Hb_004785_060 Hb_027506_020--Hb_012807_050 Hb_004586_140 Hb_004586_140 Hb_000179_070--Hb_004586_140 Hb_006816_350 Hb_006816_350 Hb_000179_070--Hb_006816_350 Hb_003020_270 Hb_003020_270 Hb_000179_070--Hb_003020_270 Hb_000661_290 Hb_000661_290 Hb_000179_070--Hb_000661_290 Hb_095296_010 Hb_095296_010 Hb_000179_070--Hb_095296_010 Hb_000696_090 Hb_000696_090 Hb_000179_070--Hb_000696_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.1646 47.6548 16.7036 10.1264 34.3642 23.9888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.727 27.8678 33.637 11.9586 4.88422

CAGE analysis