Hb_003106_050

Information

Type transcription factor
Description TF Family: Orphans
Location Contig3106: 32447-34168
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08130g
description POPTRDRAFT_824636A, POPTRDRAFT_824636B; hypothetical protein
nr
ID XP_002322144.1
description hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
swissprot
ID Q9SB04
description Two-component response regulator ARR5 OS=Arabidopsis thaliana GN=ARR5 PE=1 SV=2
trembl
ID B9IEK8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08130g PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator arr5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32869: 32648-34004
cDNA
(Sanger)
(ID:Location)		 008_H11.ab1: 32796-33999

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_050 0.0 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
2 Hb_002182_060 0.0816532648 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
3 Hb_008173_090 0.0887238949 - - glutathione peroxidase, putative [Ricinus communis]
4 Hb_014720_080 0.0903040352 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
5 Hb_029866_060 0.0905079456 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
6 Hb_000111_330 0.0936660417 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
7 Hb_000503_050 0.0936848627 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
8 Hb_002909_070 0.0939218746 - - hypothetical protein POPTR_0006s03000g [Populus trichocarpa]
9 Hb_000834_270 0.0983696248 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
10 Hb_000200_100 0.0986477365 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
11 Hb_000099_060 0.0989261875 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
12 Hb_002301_140 0.0998758593 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
13 Hb_000146_020 0.1003718812 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
14 Hb_003656_070 0.1011760438 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
15 Hb_000167_140 0.104496666 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
16 Hb_001722_100 0.1056470397 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002027_210 0.1064271558 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
18 Hb_002540_030 0.1066252517 - - hypothetical protein 32 [Hevea brasiliensis]
19 Hb_001235_190 0.1066797872 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
20 Hb_003893_090 0.1069582148 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]

Gene co-expression network

sample Hb_003106_050 Hb_003106_050 Hb_002182_060 Hb_002182_060 Hb_003106_050--Hb_002182_060 Hb_008173_090 Hb_008173_090 Hb_003106_050--Hb_008173_090 Hb_014720_080 Hb_014720_080 Hb_003106_050--Hb_014720_080 Hb_029866_060 Hb_029866_060 Hb_003106_050--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003106_050--Hb_000111_330 Hb_000503_050 Hb_000503_050 Hb_003106_050--Hb_000503_050 Hb_002182_060--Hb_008173_090 Hb_000099_060 Hb_000099_060 Hb_002182_060--Hb_000099_060 Hb_000970_010 Hb_000970_010 Hb_002182_060--Hb_000970_010 Hb_000200_100 Hb_000200_100 Hb_002182_060--Hb_000200_100 Hb_002301_140 Hb_002301_140 Hb_002182_060--Hb_002301_140 Hb_001235_190 Hb_001235_190 Hb_008173_090--Hb_001235_190 Hb_003656_070 Hb_003656_070 Hb_008173_090--Hb_003656_070 Hb_008173_090--Hb_000200_100 Hb_000574_480 Hb_000574_480 Hb_008173_090--Hb_000574_480 Hb_008173_090--Hb_000970_010 Hb_001722_100 Hb_001722_100 Hb_014720_080--Hb_001722_100 Hb_000025_120 Hb_000025_120 Hb_014720_080--Hb_000025_120 Hb_021650_030 Hb_021650_030 Hb_014720_080--Hb_021650_030 Hb_002540_030 Hb_002540_030 Hb_014720_080--Hb_002540_030 Hb_000146_020 Hb_000146_020 Hb_014720_080--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_014720_080--Hb_000834_270 Hb_029866_060--Hb_003656_070 Hb_029866_060--Hb_008173_090 Hb_002284_010 Hb_002284_010 Hb_029866_060--Hb_002284_010 Hb_029866_060--Hb_000111_330 Hb_002163_020 Hb_002163_020 Hb_029866_060--Hb_002163_020 Hb_129204_030 Hb_129204_030 Hb_029866_060--Hb_129204_030 Hb_000111_330--Hb_003656_070 Hb_000111_330--Hb_000574_480 Hb_011173_050 Hb_011173_050 Hb_000111_330--Hb_011173_050 Hb_000201_120 Hb_000201_120 Hb_000111_330--Hb_000201_120 Hb_000111_330--Hb_129204_030 Hb_002216_040 Hb_002216_040 Hb_000503_050--Hb_002216_040 Hb_005699_070 Hb_005699_070 Hb_000503_050--Hb_005699_070 Hb_000503_050--Hb_014720_080 Hb_000193_290 Hb_000193_290 Hb_000503_050--Hb_000193_290 Hb_002056_060 Hb_002056_060 Hb_000503_050--Hb_002056_060 Hb_000503_050--Hb_000834_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.834 41.0051 13.8318 25.7968 34.5684 43.1611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.168 133.411 83.6483 29.2599 21.6669

CAGE analysis