Hb_003106_080

Information

Type -
Description -
Location Contig3106: 45109-49238
Sequence    

Annotation

kegg
ID rcu:RCOM_1512770
description cell division cycle, putative
nr
ID XP_002511468.1
description cell division cycle, putative [Ricinus communis]
swissprot
ID Q9STS3
description Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana GN=APC8 PE=1 SV=1
trembl
ID B9R8Z3
description Cell division cycle, putative OS=Ricinus communis GN=RCOM_1512770 PE=4 SV=1
Gene Ontology
ID GO:0005680
description anaphase-promoting complex subunit 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_080 0.0 - - cell division cycle, putative [Ricinus communis]
2 Hb_002119_080 0.1238601445 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
3 Hb_000661_040 0.1282434446 - - PREDICTED: dihydroxy-acid dehydratase, chloroplastic [Jatropha curcas]
4 Hb_001089_110 0.1287012455 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005754_010 0.1317689225 - - hypothetical protein POPTR_0660s00210g [Populus trichocarpa]
6 Hb_000497_040 0.1332584861 - - BnaC09g09960D [Brassica napus]
7 Hb_000039_220 0.1333717436 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
8 Hb_005337_090 0.1334064793 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
9 Hb_032920_060 0.1339201566 - - PREDICTED: mitotic checkpoint protein BUB3.1 [Jatropha curcas]
10 Hb_000351_120 0.1376667758 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
11 Hb_164544_010 0.1388979943 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
12 Hb_028872_090 0.1406860836 - - PREDICTED: urease [Jatropha curcas]
13 Hb_001133_120 0.1417805689 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
14 Hb_000077_320 0.1430698424 - - PREDICTED: lanC-like protein GCL2 [Jatropha curcas]
15 Hb_063716_100 0.1433298903 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
16 Hb_000935_010 0.1435683953 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
17 Hb_001186_090 0.1445670551 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
18 Hb_000208_210 0.1460873656 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
19 Hb_000107_190 0.1461138222 - - 50S ribosomal protein L20 [Hevea brasiliensis]
20 Hb_106552_020 0.1463867592 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003106_080 Hb_003106_080 Hb_002119_080 Hb_002119_080 Hb_003106_080--Hb_002119_080 Hb_000661_040 Hb_000661_040 Hb_003106_080--Hb_000661_040 Hb_001089_110 Hb_001089_110 Hb_003106_080--Hb_001089_110 Hb_005754_010 Hb_005754_010 Hb_003106_080--Hb_005754_010 Hb_000497_040 Hb_000497_040 Hb_003106_080--Hb_000497_040 Hb_000039_220 Hb_000039_220 Hb_003106_080--Hb_000039_220 Hb_004122_040 Hb_004122_040 Hb_002119_080--Hb_004122_040 Hb_000331_060 Hb_000331_060 Hb_002119_080--Hb_000331_060 Hb_073973_130 Hb_073973_130 Hb_002119_080--Hb_073973_130 Hb_001186_090 Hb_001186_090 Hb_002119_080--Hb_001186_090 Hb_000107_190 Hb_000107_190 Hb_002119_080--Hb_000107_190 Hb_022132_050 Hb_022132_050 Hb_002119_080--Hb_022132_050 Hb_000082_010 Hb_000082_010 Hb_000661_040--Hb_000082_010 Hb_003363_080 Hb_003363_080 Hb_000661_040--Hb_003363_080 Hb_028872_090 Hb_028872_090 Hb_000661_040--Hb_028872_090 Hb_000077_320 Hb_000077_320 Hb_000661_040--Hb_000077_320 Hb_000329_800 Hb_000329_800 Hb_000661_040--Hb_000329_800 Hb_008114_040 Hb_008114_040 Hb_000661_040--Hb_008114_040 Hb_079526_030 Hb_079526_030 Hb_001089_110--Hb_079526_030 Hb_001433_070 Hb_001433_070 Hb_001089_110--Hb_001433_070 Hb_005337_090 Hb_005337_090 Hb_001089_110--Hb_005337_090 Hb_183612_040 Hb_183612_040 Hb_001089_110--Hb_183612_040 Hb_000575_040 Hb_000575_040 Hb_001089_110--Hb_000575_040 Hb_000331_110 Hb_000331_110 Hb_001089_110--Hb_000331_110 Hb_002309_010 Hb_002309_010 Hb_005754_010--Hb_002309_010 Hb_032278_020 Hb_032278_020 Hb_005754_010--Hb_032278_020 Hb_164544_010 Hb_164544_010 Hb_005754_010--Hb_164544_010 Hb_000120_430 Hb_000120_430 Hb_005754_010--Hb_000120_430 Hb_001454_380 Hb_001454_380 Hb_005754_010--Hb_001454_380 Hb_103760_010 Hb_103760_010 Hb_005754_010--Hb_103760_010 Hb_005488_140 Hb_005488_140 Hb_000497_040--Hb_005488_140 Hb_000904_080 Hb_000904_080 Hb_000497_040--Hb_000904_080 Hb_002374_010 Hb_002374_010 Hb_000497_040--Hb_002374_010 Hb_004055_170 Hb_004055_170 Hb_000497_040--Hb_004055_170 Hb_000497_040--Hb_000077_320 Hb_001133_120 Hb_001133_120 Hb_000039_220--Hb_001133_120 Hb_000768_090 Hb_000768_090 Hb_000039_220--Hb_000768_090 Hb_002303_070 Hb_002303_070 Hb_000039_220--Hb_002303_070 Hb_000317_240 Hb_000317_240 Hb_000039_220--Hb_000317_240 Hb_002197_020 Hb_002197_020 Hb_000039_220--Hb_002197_020 Hb_001357_350 Hb_001357_350 Hb_000039_220--Hb_001357_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.217842 0.133847 0.293962 0.113509 0.142161 0.392699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.100845 0.25787 0.150036 0.252789 0.0835822

CAGE analysis