Hb_003106_100

Information

Type -
Description -
Location Contig3106: 55222-60559
Sequence    

Annotation

kegg
ID rcu:RCOM_1512730
description mannose-1-phosphate guanyltransferase, putative (EC:2.7.7.13)
nr
ID XP_002511464.1
description mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
swissprot
ID Q86HG0
description Mannose-1-phosphate guanyltransferase alpha OS=Dictyostelium discoideum GN=gmppA PE=2 SV=1
trembl
ID B9R8Y9
description Mannose-1-phosphate guanyltransferase, putative OS=Ricinus communis GN=RCOM_1512730 PE=4 SV=1
Gene Ontology
ID GO:0005777
description mannose-1-phosphate guanyltransferase alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32879: 55268-60299 , PASA_asmbl_32880: 56727-57039
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_100 0.0 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
2 Hb_002876_020 0.0404982534 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
3 Hb_000649_140 0.0695479307 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
4 Hb_001019_150 0.0786364015 - - Acyl-protein thioesterase, putative [Ricinus communis]
5 Hb_000428_060 0.088645667 - - malate dehydrogenase, putative [Ricinus communis]
6 Hb_001353_010 0.0938335735 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
7 Hb_000465_070 0.096387538 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
8 Hb_000056_070 0.0964493445 - - -
9 Hb_000035_480 0.0972857473 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
10 Hb_008232_010 0.100790763 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
11 Hb_000403_070 0.1011767338 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000457_290 0.1016701618 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
13 Hb_001123_160 0.1025870406 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
14 Hb_000107_150 0.1035909143 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
15 Hb_186982_040 0.1060738926 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
16 Hb_002609_200 0.1072214884 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_001410_060 0.1072605487 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
18 Hb_001892_070 0.1076245118 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
19 Hb_001979_020 0.1076444271 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
20 Hb_001575_060 0.110749161 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_003106_100 Hb_003106_100 Hb_002876_020 Hb_002876_020 Hb_003106_100--Hb_002876_020 Hb_000649_140 Hb_000649_140 Hb_003106_100--Hb_000649_140 Hb_001019_150 Hb_001019_150 Hb_003106_100--Hb_001019_150 Hb_000428_060 Hb_000428_060 Hb_003106_100--Hb_000428_060 Hb_001353_010 Hb_001353_010 Hb_003106_100--Hb_001353_010 Hb_000465_070 Hb_000465_070 Hb_003106_100--Hb_000465_070 Hb_002876_020--Hb_000649_140 Hb_002876_020--Hb_001019_150 Hb_002876_020--Hb_000428_060 Hb_002876_020--Hb_001353_010 Hb_001242_080 Hb_001242_080 Hb_002876_020--Hb_001242_080 Hb_000700_040 Hb_000700_040 Hb_000649_140--Hb_000700_040 Hb_001307_030 Hb_001307_030 Hb_000649_140--Hb_001307_030 Hb_011249_020 Hb_011249_020 Hb_000649_140--Hb_011249_020 Hb_000649_140--Hb_000428_060 Hb_000056_070 Hb_000056_070 Hb_001019_150--Hb_000056_070 Hb_007827_010 Hb_007827_010 Hb_001019_150--Hb_007827_010 Hb_001329_150 Hb_001329_150 Hb_001019_150--Hb_001329_150 Hb_001019_150--Hb_001353_010 Hb_001123_160 Hb_001123_160 Hb_000428_060--Hb_001123_160 Hb_005276_040 Hb_005276_040 Hb_000428_060--Hb_005276_040 Hb_180343_010 Hb_180343_010 Hb_000428_060--Hb_180343_010 Hb_002045_060 Hb_002045_060 Hb_000428_060--Hb_002045_060 Hb_045003_010 Hb_045003_010 Hb_001353_010--Hb_045003_010 Hb_001489_110 Hb_001489_110 Hb_001353_010--Hb_001489_110 Hb_000808_190 Hb_000808_190 Hb_001353_010--Hb_000808_190 Hb_002303_060 Hb_002303_060 Hb_001353_010--Hb_002303_060 Hb_000563_200 Hb_000563_200 Hb_001353_010--Hb_000563_200 Hb_025098_010 Hb_025098_010 Hb_001353_010--Hb_025098_010 Hb_000035_480 Hb_000035_480 Hb_000465_070--Hb_000035_480 Hb_000457_290 Hb_000457_290 Hb_000465_070--Hb_000457_290 Hb_000403_070 Hb_000403_070 Hb_000465_070--Hb_000403_070 Hb_002232_060 Hb_002232_060 Hb_000465_070--Hb_002232_060 Hb_100886_010 Hb_100886_010 Hb_000465_070--Hb_100886_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.04582 3.171 8.3277 14.4631 2.42108 5.38362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8119 21.3698 9.88558 11.1332 13.6039

CAGE analysis