Hb_003106_130

Information

Type -
Description -
Location Contig3106: 88269-91705
Sequence    

Annotation

kegg
ID rcu:RCOM_1512580
description Methyltransferase gidB, putative
nr
ID XP_012080139.1
description PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
swissprot
ID A8MKR7
description Ribosomal RNA small subunit methyltransferase G OS=Alkaliphilus oremlandii (strain OhILAs) GN=rsmG PE=3 SV=1
trembl
ID B9RB84
description Methyltransferase gidB, putative OS=Ricinus communis GN=RCOM_1512580 PE=3 SV=1
Gene Ontology
ID GO:0005737
description ribosomal rna small subunit methyltransferase g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32883: 88155-91724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_130 0.0 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
2 Hb_003120_060 0.0783523726 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
3 Hb_119583_010 0.0827563534 - - 60S ribosomal protein L12A [Hevea brasiliensis]
4 Hb_001246_100 0.09049306 - - Ras-related small GTP-binding family protein [Theobroma cacao]
5 Hb_002942_020 0.0905477939 - - nucleotide binding protein, putative [Ricinus communis]
6 Hb_000019_230 0.0924341916 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
7 Hb_002235_150 0.09336298 - - -
8 Hb_000317_430 0.0940992562 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
9 Hb_033642_020 0.0950841268 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
10 Hb_027892_060 0.0953265249 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
11 Hb_000157_030 0.0960147531 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
12 Hb_003911_040 0.0973510159 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
13 Hb_001214_130 0.0980326601 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
14 Hb_000997_060 0.0981543659 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
15 Hb_010608_010 0.098165111 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
16 Hb_000035_380 0.0989280779 - - -
17 Hb_007632_250 0.0990525917 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003125_040 0.0991922615 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
19 Hb_006447_010 0.0994610988 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
20 Hb_000905_190 0.0996990385 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]

Gene co-expression network

sample Hb_003106_130 Hb_003106_130 Hb_003120_060 Hb_003120_060 Hb_003106_130--Hb_003120_060 Hb_119583_010 Hb_119583_010 Hb_003106_130--Hb_119583_010 Hb_001246_100 Hb_001246_100 Hb_003106_130--Hb_001246_100 Hb_002942_020 Hb_002942_020 Hb_003106_130--Hb_002942_020 Hb_000019_230 Hb_000019_230 Hb_003106_130--Hb_000019_230 Hb_002235_150 Hb_002235_150 Hb_003106_130--Hb_002235_150 Hb_003120_060--Hb_000019_230 Hb_001214_130 Hb_001214_130 Hb_003120_060--Hb_001214_130 Hb_000188_100 Hb_000188_100 Hb_003120_060--Hb_000188_100 Hb_003005_020 Hb_003005_020 Hb_003120_060--Hb_003005_020 Hb_003038_030 Hb_003038_030 Hb_003120_060--Hb_003038_030 Hb_007632_250 Hb_007632_250 Hb_119583_010--Hb_007632_250 Hb_003633_130 Hb_003633_130 Hb_119583_010--Hb_003633_130 Hb_004502_030 Hb_004502_030 Hb_119583_010--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_119583_010--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_119583_010--Hb_002997_170 Hb_006447_010 Hb_006447_010 Hb_001246_100--Hb_006447_010 Hb_001454_140 Hb_001454_140 Hb_001246_100--Hb_001454_140 Hb_007193_100 Hb_007193_100 Hb_001246_100--Hb_007193_100 Hb_000386_040 Hb_000386_040 Hb_001246_100--Hb_000386_040 Hb_000175_070 Hb_000175_070 Hb_001246_100--Hb_000175_070 Hb_143813_010 Hb_143813_010 Hb_001246_100--Hb_143813_010 Hb_027892_060 Hb_027892_060 Hb_002942_020--Hb_027892_060 Hb_003125_040 Hb_003125_040 Hb_002942_020--Hb_003125_040 Hb_118419_020 Hb_118419_020 Hb_002942_020--Hb_118419_020 Hb_003540_040 Hb_003540_040 Hb_002942_020--Hb_003540_040 Hb_168918_020 Hb_168918_020 Hb_002942_020--Hb_168918_020 Hb_000905_190 Hb_000905_190 Hb_002942_020--Hb_000905_190 Hb_003551_020 Hb_003551_020 Hb_000019_230--Hb_003551_020 Hb_000019_230--Hb_003038_030 Hb_000019_230--Hb_000188_100 Hb_000977_080 Hb_000977_080 Hb_000019_230--Hb_000977_080 Hb_004195_160 Hb_004195_160 Hb_000019_230--Hb_004195_160 Hb_003746_040 Hb_003746_040 Hb_002235_150--Hb_003746_040 Hb_002408_010 Hb_002408_010 Hb_002235_150--Hb_002408_010 Hb_002235_150--Hb_003120_060 Hb_000622_100 Hb_000622_100 Hb_002235_150--Hb_000622_100 Hb_043302_010 Hb_043302_010 Hb_002235_150--Hb_043302_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.58317 3.01151 2.62371 2.42464 11.5256 17.2367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7215 10.0042 5.16075 2.47985 1.33599

CAGE analysis