Hb_003106_140

Information

Type -
Description -
Location Contig3106: 95086-95367
Sequence    

Annotation

kegg
ID rcu:RCOM_1512570
description hypothetical protein
nr
ID XP_002511458.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RB83
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1512570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32884: 95044-95675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004206_030 0.0930145921 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
3 Hb_060668_010 0.1005551001 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
4 Hb_000032_220 0.1230115039 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
5 Hb_002387_060 0.1237130022 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001514_180 0.1280543002 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
7 Hb_000041_070 0.1290300524 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
8 Hb_001396_220 0.129854386 - - nuclear transport factor, putative [Ricinus communis]
9 Hb_005618_040 0.1320171066 - - -
10 Hb_111648_010 0.135624357 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
11 Hb_042729_010 0.1362860763 - - -
12 Hb_000261_460 0.1365216635 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
13 Hb_000085_300 0.1369695067 - - -
14 Hb_001741_080 0.1370966056 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
15 Hb_012725_110 0.1402445018 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
16 Hb_055259_010 0.1416550953 - - -
17 Hb_006816_440 0.1462262313 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_008847_010 0.146393551 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
19 Hb_000107_650 0.1485788797 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
20 Hb_001999_120 0.1502137065 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003106_140 Hb_003106_140 Hb_004206_030 Hb_004206_030 Hb_003106_140--Hb_004206_030 Hb_060668_010 Hb_060668_010 Hb_003106_140--Hb_060668_010 Hb_000032_220 Hb_000032_220 Hb_003106_140--Hb_000032_220 Hb_002387_060 Hb_002387_060 Hb_003106_140--Hb_002387_060 Hb_001514_180 Hb_001514_180 Hb_003106_140--Hb_001514_180 Hb_000041_070 Hb_000041_070 Hb_003106_140--Hb_000041_070 Hb_004206_030--Hb_060668_010 Hb_012725_110 Hb_012725_110 Hb_004206_030--Hb_012725_110 Hb_004206_030--Hb_000041_070 Hb_042729_010 Hb_042729_010 Hb_004206_030--Hb_042729_010 Hb_004206_030--Hb_002387_060 Hb_001741_080 Hb_001741_080 Hb_060668_010--Hb_001741_080 Hb_060668_010--Hb_000041_070 Hb_005016_130 Hb_005016_130 Hb_060668_010--Hb_005016_130 Hb_060668_010--Hb_001514_180 Hb_030765_020 Hb_030765_020 Hb_060668_010--Hb_030765_020 Hb_001396_220 Hb_001396_220 Hb_000032_220--Hb_001396_220 Hb_015934_020 Hb_015934_020 Hb_000032_220--Hb_015934_020 Hb_000032_220--Hb_002387_060 Hb_002078_460 Hb_002078_460 Hb_000032_220--Hb_002078_460 Hb_183963_020 Hb_183963_020 Hb_000032_220--Hb_183963_020 Hb_002352_010 Hb_002352_010 Hb_000032_220--Hb_002352_010 Hb_012522_030 Hb_012522_030 Hb_002387_060--Hb_012522_030 Hb_002387_060--Hb_015934_020 Hb_000085_300 Hb_000085_300 Hb_002387_060--Hb_000085_300 Hb_002387_060--Hb_183963_020 Hb_002291_030 Hb_002291_030 Hb_002387_060--Hb_002291_030 Hb_024505_040 Hb_024505_040 Hb_001514_180--Hb_024505_040 Hb_001514_180--Hb_000041_070 Hb_001514_180--Hb_001741_080 Hb_111648_010 Hb_111648_010 Hb_001514_180--Hb_111648_010 Hb_000444_030 Hb_000444_030 Hb_001514_180--Hb_000444_030 Hb_000041_070--Hb_001741_080 Hb_000041_070--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_000041_070--Hb_002685_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
427.793 25.1503 1.5506 29.1131 141.191 454.94
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
878.71 572.197 588.737 197.797 1.0321

CAGE analysis