Hb_003106_150

Information

Type -
Description -
Location Contig3106: 117277-118915
Sequence    

Annotation

kegg
ID rcu:RCOM_1512460
description ubiquitin-protein ligase, putative
nr
ID XP_012080138.1
description PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
swissprot
ID Q9FJP6
description U-box domain-containing protein 38 OS=Arabidopsis thaliana GN=PUB38 PE=1 SV=1
trembl
ID A0A067KH44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11525 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 38

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_150 0.0 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
2 Hb_017075_030 0.0728752863 - - helicase, putative [Ricinus communis]
3 Hb_010128_070 0.0749936896 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_002849_080 0.0958871846 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
5 Hb_001157_180 0.1015027702 - - protein binding protein, putative [Ricinus communis]
6 Hb_000504_160 0.1019545477 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
7 Hb_010128_090 0.104822491 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
8 Hb_001946_300 0.1055160826 - - PREDICTED: F-box protein At-B [Jatropha curcas]
9 Hb_002977_010 0.105695142 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
10 Hb_004017_040 0.1065133286 - - kinetochore protein nuf2, putative [Ricinus communis]
11 Hb_000406_240 0.1077740608 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
12 Hb_000281_010 0.1087444078 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
13 Hb_155702_010 0.1094076127 - - Tetraspanin-5 [Gossypium arboreum]
14 Hb_032202_240 0.1095839929 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
15 Hb_003878_140 0.11014329 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
16 Hb_011465_030 0.1128011837 - - PREDICTED: B2 protein [Jatropha curcas]
17 Hb_004920_130 0.1138836033 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
18 Hb_000186_260 0.1148762402 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
19 Hb_000363_130 0.1161460551 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
20 Hb_006316_070 0.1166564222 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003106_150 Hb_003106_150 Hb_017075_030 Hb_017075_030 Hb_003106_150--Hb_017075_030 Hb_010128_070 Hb_010128_070 Hb_003106_150--Hb_010128_070 Hb_002849_080 Hb_002849_080 Hb_003106_150--Hb_002849_080 Hb_001157_180 Hb_001157_180 Hb_003106_150--Hb_001157_180 Hb_000504_160 Hb_000504_160 Hb_003106_150--Hb_000504_160 Hb_010128_090 Hb_010128_090 Hb_003106_150--Hb_010128_090 Hb_033883_060 Hb_033883_060 Hb_017075_030--Hb_033883_060 Hb_000406_240 Hb_000406_240 Hb_017075_030--Hb_000406_240 Hb_031042_070 Hb_031042_070 Hb_017075_030--Hb_031042_070 Hb_001946_300 Hb_001946_300 Hb_017075_030--Hb_001946_300 Hb_003878_140 Hb_003878_140 Hb_017075_030--Hb_003878_140 Hb_000281_010 Hb_000281_010 Hb_010128_070--Hb_000281_010 Hb_010128_070--Hb_017075_030 Hb_009620_030 Hb_009620_030 Hb_010128_070--Hb_009620_030 Hb_006615_100 Hb_006615_100 Hb_010128_070--Hb_006615_100 Hb_000116_460 Hb_000116_460 Hb_010128_070--Hb_000116_460 Hb_148209_020 Hb_148209_020 Hb_002849_080--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002849_080--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_002849_080--Hb_002977_010 Hb_002609_010 Hb_002609_010 Hb_002849_080--Hb_002609_010 Hb_011465_030 Hb_011465_030 Hb_002849_080--Hb_011465_030 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020 Hb_004920_130 Hb_004920_130 Hb_001157_180--Hb_004920_130 Hb_001157_180--Hb_010128_090 Hb_001157_180--Hb_031042_070 Hb_000343_210 Hb_000343_210 Hb_001157_180--Hb_000343_210 Hb_001157_180--Hb_017075_030 Hb_000002_440 Hb_000002_440 Hb_001157_180--Hb_000002_440 Hb_002659_060 Hb_002659_060 Hb_000504_160--Hb_002659_060 Hb_001396_290 Hb_001396_290 Hb_000504_160--Hb_001396_290 Hb_000504_160--Hb_000343_210 Hb_000504_160--Hb_001946_300 Hb_000640_020 Hb_000640_020 Hb_000504_160--Hb_000640_020 Hb_006829_090 Hb_006829_090 Hb_000504_160--Hb_006829_090 Hb_000665_030 Hb_000665_030 Hb_010128_090--Hb_000665_030 Hb_010128_090--Hb_017075_030 Hb_010128_090--Hb_003878_140 Hb_000310_080 Hb_000310_080 Hb_010128_090--Hb_000310_080 Hb_010128_090--Hb_004920_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.0712 33.1438 10.0348 7.31396 26.4975 31.4031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.865 8.72189 7.70866 10.1501 4.62592

CAGE analysis