Hb_003106_170

Information

Type -
Description -
Location Contig3106: 126857-132547
Sequence    

Annotation

kegg
ID rcu:RCOM_1512450
description Endonuclease III, putative
nr
ID XP_002511456.1
description Endonuclease III, putative [Ricinus communis]
swissprot
ID F4JCQ3
description Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana GN=At3g47830 PE=3 SV=1
trembl
ID B9RB81
description Endonuclease III, putative OS=Ricinus communis GN=RCOM_1512450 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna glycosylase at3g47830

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32890: 126966-130745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_170 0.0 - - Endonuclease III, putative [Ricinus communis]
2 Hb_000977_270 0.0855553714 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
3 Hb_007044_250 0.0872861311 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001484_080 0.1050827789 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
5 Hb_000062_520 0.1136914617 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002304_180 0.1232274451 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
7 Hb_000667_140 0.1260181714 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
8 Hb_003494_030 0.130208629 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
9 Hb_003752_060 0.1336666096 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
10 Hb_036790_120 0.1368839758 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
11 Hb_001133_100 0.1465944935 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
12 Hb_000754_050 0.1547402518 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
13 Hb_000402_170 0.1556793733 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
14 Hb_114861_010 0.1559514813 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
15 Hb_001405_090 0.161760446 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
16 Hb_007694_060 0.163372193 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
17 Hb_000012_010 0.1641853325 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
18 Hb_005563_040 0.168732397 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
19 Hb_001390_020 0.171142297 - - malate dehydrogenase, putative [Ricinus communis]
20 Hb_007426_170 0.1727829739 transcription factor TF Family: TCP -

Gene co-expression network

sample Hb_003106_170 Hb_003106_170 Hb_000977_270 Hb_000977_270 Hb_003106_170--Hb_000977_270 Hb_007044_250 Hb_007044_250 Hb_003106_170--Hb_007044_250 Hb_001484_080 Hb_001484_080 Hb_003106_170--Hb_001484_080 Hb_000062_520 Hb_000062_520 Hb_003106_170--Hb_000062_520 Hb_002304_180 Hb_002304_180 Hb_003106_170--Hb_002304_180 Hb_000667_140 Hb_000667_140 Hb_003106_170--Hb_000667_140 Hb_000977_270--Hb_007044_250 Hb_036790_120 Hb_036790_120 Hb_000977_270--Hb_036790_120 Hb_000977_270--Hb_001484_080 Hb_000977_270--Hb_002304_180 Hb_003752_060 Hb_003752_060 Hb_000977_270--Hb_003752_060 Hb_007044_250--Hb_001484_080 Hb_007044_250--Hb_003752_060 Hb_007044_250--Hb_002304_180 Hb_007044_250--Hb_036790_120 Hb_114861_010 Hb_114861_010 Hb_001484_080--Hb_114861_010 Hb_001792_030 Hb_001792_030 Hb_001484_080--Hb_001792_030 Hb_001484_080--Hb_003752_060 Hb_000062_520--Hb_001484_080 Hb_000062_520--Hb_000667_140 Hb_000062_520--Hb_007044_250 Hb_000062_520--Hb_002304_180 Hb_000062_520--Hb_000977_270 Hb_003494_030 Hb_003494_030 Hb_002304_180--Hb_003494_030 Hb_002304_180--Hb_000667_140 Hb_000023_210 Hb_000023_210 Hb_002304_180--Hb_000023_210 Hb_000402_170 Hb_000402_170 Hb_002304_180--Hb_000402_170 Hb_000038_020 Hb_000038_020 Hb_000667_140--Hb_000038_020 Hb_003427_080 Hb_003427_080 Hb_000667_140--Hb_003427_080 Hb_000667_140--Hb_003494_030 Hb_001266_160 Hb_001266_160 Hb_000667_140--Hb_001266_160 Hb_000359_070 Hb_000359_070 Hb_000667_140--Hb_000359_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.20268 0.57003 11.4777 2.48522 0.76446 1.81994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.80214 4.13236 1.96576 1.58517 32.768

CAGE analysis