Hb_003106_220

Information

Type -
Description -
Location Contig3106: 154592-159314
Sequence    

Annotation

kegg
ID pop:POPTR_0704s00200g
description hypothetical protein
nr
ID XP_012080125.1
description PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
swissprot
ID Q3E870
description Succinate dehydrogenase subunit 7B, mitochondrial OS=Arabidopsis thaliana GN=SDH7B PE=1 SV=1
trembl
ID D7SHW9
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g07810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32905: 152176-153803 , PASA_asmbl_32906: 154699-159309
cDNA
(Sanger)
(ID:Location)		 003_L13.ab1: 154700-159124 , 008_P07.ab1: 154891-158814 , 014_F16.ab1: 154699-158874 , 017_N09.ab1: 154700-159060 , 043_K10.ab1: 154699-158873 , 049_K09.ab1: 154704-155897 , 050_O15.ab1: 154687-158847 , 053_B09.ab1: 154701-158873

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_220 0.0 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
2 Hb_004800_060 0.0885829382 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
3 Hb_002192_010 0.1155883197 - - -
4 Hb_062226_140 0.1164790845 - - PREDICTED: protein NEDD1 [Jatropha curcas]
5 Hb_004162_210 0.1202848544 - - Cyclin-dependent kinases regulatory subunit, putative [Ricinus communis]
6 Hb_000676_140 0.1215444597 - - structural constituent of ribosome, putative [Ricinus communis]
7 Hb_001016_150 0.1247972801 - - Rop1 [Hevea brasiliensis]
8 Hb_005391_040 0.1272244318 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
9 Hb_124953_020 0.128639276 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
10 Hb_007875_030 0.1302533029 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
11 Hb_001269_610 0.1309439312 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
12 Hb_000465_390 0.1317487615 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
13 Hb_005773_060 0.1336296088 - - defender against cell death, putative [Ricinus communis]
14 Hb_000923_090 0.1339810431 - - -
15 Hb_150651_040 0.1350721811 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
16 Hb_002232_130 0.1386713791 - - -
17 Hb_001863_430 0.1387471764 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
18 Hb_000562_030 0.140688891 - - conserved hypothetical protein [Ricinus communis]
19 Hb_153544_010 0.1411754261 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
20 Hb_000172_640 0.1419319165 - - hypothetical protein POPTR_0007s06250g [Populus trichocarpa]

Gene co-expression network

sample Hb_003106_220 Hb_003106_220 Hb_004800_060 Hb_004800_060 Hb_003106_220--Hb_004800_060 Hb_002192_010 Hb_002192_010 Hb_003106_220--Hb_002192_010 Hb_062226_140 Hb_062226_140 Hb_003106_220--Hb_062226_140 Hb_004162_210 Hb_004162_210 Hb_003106_220--Hb_004162_210 Hb_000676_140 Hb_000676_140 Hb_003106_220--Hb_000676_140 Hb_001016_150 Hb_001016_150 Hb_003106_220--Hb_001016_150 Hb_124953_020 Hb_124953_020 Hb_004800_060--Hb_124953_020 Hb_004800_060--Hb_004162_210 Hb_004800_060--Hb_001016_150 Hb_000172_640 Hb_000172_640 Hb_004800_060--Hb_000172_640 Hb_126861_010 Hb_126861_010 Hb_004800_060--Hb_126861_010 Hb_007423_040 Hb_007423_040 Hb_002192_010--Hb_007423_040 Hb_002192_010--Hb_124953_020 Hb_002078_140 Hb_002078_140 Hb_002192_010--Hb_002078_140 Hb_005773_060 Hb_005773_060 Hb_002192_010--Hb_005773_060 Hb_000610_050 Hb_000610_050 Hb_002192_010--Hb_000610_050 Hb_002192_010--Hb_000172_640 Hb_000342_100 Hb_000342_100 Hb_062226_140--Hb_000342_100 Hb_000207_400 Hb_000207_400 Hb_062226_140--Hb_000207_400 Hb_000331_470 Hb_000331_470 Hb_062226_140--Hb_000331_470 Hb_005391_040 Hb_005391_040 Hb_062226_140--Hb_005391_040 Hb_000465_390 Hb_000465_390 Hb_062226_140--Hb_000465_390 Hb_000111_380 Hb_000111_380 Hb_062226_140--Hb_000111_380 Hb_001047_240 Hb_001047_240 Hb_004162_210--Hb_001047_240 Hb_007875_030 Hb_007875_030 Hb_004162_210--Hb_007875_030 Hb_153544_010 Hb_153544_010 Hb_004162_210--Hb_153544_010 Hb_004162_210--Hb_124953_020 Hb_006915_040 Hb_006915_040 Hb_004162_210--Hb_006915_040 Hb_000011_570 Hb_000011_570 Hb_000676_140--Hb_000011_570 Hb_004709_010 Hb_004709_010 Hb_000676_140--Hb_004709_010 Hb_000866_240 Hb_000866_240 Hb_000676_140--Hb_000866_240 Hb_014720_040 Hb_014720_040 Hb_000676_140--Hb_014720_040 Hb_000676_140--Hb_001016_150 Hb_001863_430 Hb_001863_430 Hb_000676_140--Hb_001863_430 Hb_001016_150--Hb_124953_020 Hb_001016_150--Hb_001863_430 Hb_001016_150--Hb_002078_140 Hb_001341_150 Hb_001341_150 Hb_001016_150--Hb_001341_150 Hb_002811_170 Hb_002811_170 Hb_001016_150--Hb_002811_170 Hb_000506_070 Hb_000506_070 Hb_001016_150--Hb_000506_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.4588 22.1346 42.1944 63.8917 32.3827 22.8924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.2133 93.126 12.1878 40.7208 16.2868

CAGE analysis