Hb_003106_230

Information

Type transcription factor
Description TF Family: LIM
Location Contig3106: 160675-164288
Sequence    

Annotation

kegg
ID rcu:RCOM_1511990
description Pollen-specific protein SF3, putative
nr
ID XP_012080123.1
description PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
swissprot
ID Q94JX5
description LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana GN=WLIM1 PE=1 SV=1
trembl
ID A0A067KFV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11516 PE=4 SV=1
Gene Ontology
ID GO:0008270
description pollen-specific protein sf3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32907: 161403-162719 , PASA_asmbl_32908: 160767-164278
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_230 0.0 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
2 Hb_003142_060 0.1041746195 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000731_210 0.108887608 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000318_170 0.1145047944 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
5 Hb_001008_110 0.1158595376 - - -
6 Hb_000024_130 0.1178115859 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000085_380 0.1184927534 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003106_110 0.1206148208 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
9 Hb_000003_020 0.1217103407 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
10 Hb_000739_160 0.1249425437 - - DNA binding protein, putative [Ricinus communis]
11 Hb_001018_080 0.1263267616 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004656_010 0.1277133015 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
13 Hb_004079_100 0.1293743247 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
14 Hb_000438_010 0.1308115863 - - -
15 Hb_000417_280 0.1319054574 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007575_030 0.1333900548 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
17 Hb_000760_080 0.1357920527 - - mutt domain protein, putative [Ricinus communis]
18 Hb_005485_070 0.1365142272 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
19 Hb_002301_370 0.1391439389 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
20 Hb_001776_100 0.1394055661 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003106_230 Hb_003106_230 Hb_003142_060 Hb_003142_060 Hb_003106_230--Hb_003142_060 Hb_000731_210 Hb_000731_210 Hb_003106_230--Hb_000731_210 Hb_000318_170 Hb_000318_170 Hb_003106_230--Hb_000318_170 Hb_001008_110 Hb_001008_110 Hb_003106_230--Hb_001008_110 Hb_000024_130 Hb_000024_130 Hb_003106_230--Hb_000024_130 Hb_000085_380 Hb_000085_380 Hb_003106_230--Hb_000085_380 Hb_000003_020 Hb_000003_020 Hb_003142_060--Hb_000003_020 Hb_000834_040 Hb_000834_040 Hb_003142_060--Hb_000834_040 Hb_003142_060--Hb_001008_110 Hb_042202_020 Hb_042202_020 Hb_003142_060--Hb_042202_020 Hb_003142_060--Hb_000024_130 Hb_002301_370 Hb_002301_370 Hb_000731_210--Hb_002301_370 Hb_000731_210--Hb_000024_130 Hb_001048_100 Hb_001048_100 Hb_000731_210--Hb_001048_100 Hb_031385_010 Hb_031385_010 Hb_000731_210--Hb_031385_010 Hb_000731_210--Hb_000318_170 Hb_005485_070 Hb_005485_070 Hb_000318_170--Hb_005485_070 Hb_000791_050 Hb_000791_050 Hb_000318_170--Hb_000791_050 Hb_000309_030 Hb_000309_030 Hb_000318_170--Hb_000309_030 Hb_000116_240 Hb_000116_240 Hb_000318_170--Hb_000116_240 Hb_007575_030 Hb_007575_030 Hb_000318_170--Hb_007575_030 Hb_000417_280 Hb_000417_280 Hb_001008_110--Hb_000417_280 Hb_002833_020 Hb_002833_020 Hb_001008_110--Hb_002833_020 Hb_064985_010 Hb_064985_010 Hb_001008_110--Hb_064985_010 Hb_032717_010 Hb_032717_010 Hb_001008_110--Hb_032717_010 Hb_001008_110--Hb_042202_020 Hb_000760_080 Hb_000760_080 Hb_000024_130--Hb_000760_080 Hb_000024_130--Hb_007575_030 Hb_000024_130--Hb_042202_020 Hb_000085_380--Hb_002833_020 Hb_000085_380--Hb_000318_170 Hb_001221_390 Hb_001221_390 Hb_000085_380--Hb_001221_390 Hb_000085_380--Hb_001008_110 Hb_033234_010 Hb_033234_010 Hb_000085_380--Hb_033234_010 Hb_003106_110 Hb_003106_110 Hb_000085_380--Hb_003106_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.665005 21.9395 27.4998 33.0227 0.789521 3.70634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.74876 1.17478 0.51409 38.6477 17.0318

CAGE analysis