Hb_003117_010

Information

Type -
Description -
Location Contig3117: 2184-3264
Sequence    

Annotation

kegg
ID vvi:100259103
description uncharacterized LOC100259103
nr
ID XP_003634377.1
description PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID E0CPJ4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g13700 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cell growth defect factor-2 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32951: 2140-3720 , PASA_asmbl_32952: 2263-2503
cDNA
(Sanger)
(ID:Location)		 015_M01.ab1: 2181-3547 , 028_O15.ab1: 2183-3571 , 031_B06.ab1: 2181-3588 , 045_A23.ab1: 2183-3607 , 053_O20.ab1: 2183-3595

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003117_010 0.0 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]
2 Hb_027751_060 0.1245871714 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
3 Hb_003294_100 0.1328339588 - - hypothetical protein VITISV_009629 [Vitis vinifera]
4 Hb_013893_010 0.1350636446 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
5 Hb_092107_010 0.13903701 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001294_010 0.1409225962 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
7 Hb_002078_480 0.1458052759 - - hypothetical protein CICLE_v10033318mg [Citrus clementina]
8 Hb_004056_030 0.146849769 - - hypothetical protein 33 [Hevea brasiliensis]
9 Hb_009372_030 0.1510728302 - - 50S ribosomal protein L6, putative [Ricinus communis]
10 Hb_083380_010 0.1533658595 - - -
11 Hb_000297_040 0.1539272713 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
12 Hb_002239_060 0.1550781648 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
13 Hb_001008_090 0.1574425457 - - cytochrome C oxidase, putative [Ricinus communis]
14 Hb_011316_020 0.159171499 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
15 Hb_000648_020 0.1621505044 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
16 Hb_001481_140 0.1634529683 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
17 Hb_011537_110 0.1643369803 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
18 Hb_001357_010 0.1643603655 - - -
19 Hb_183961_010 0.1644843805 - - PREDICTED: inactive rhomboid protein 1 [Cucumis sativus]
20 Hb_000072_180 0.1652802403 - - PREDICTED: EVI5-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_003117_010 Hb_003117_010 Hb_027751_060 Hb_027751_060 Hb_003117_010--Hb_027751_060 Hb_003294_100 Hb_003294_100 Hb_003117_010--Hb_003294_100 Hb_013893_010 Hb_013893_010 Hb_003117_010--Hb_013893_010 Hb_092107_010 Hb_092107_010 Hb_003117_010--Hb_092107_010 Hb_001294_010 Hb_001294_010 Hb_003117_010--Hb_001294_010 Hb_002078_480 Hb_002078_480 Hb_003117_010--Hb_002078_480 Hb_000056_250 Hb_000056_250 Hb_027751_060--Hb_000056_250 Hb_000096_150 Hb_000096_150 Hb_027751_060--Hb_000096_150 Hb_000046_350 Hb_000046_350 Hb_027751_060--Hb_000046_350 Hb_005167_030 Hb_005167_030 Hb_027751_060--Hb_005167_030 Hb_000417_260 Hb_000417_260 Hb_027751_060--Hb_000417_260 Hb_001284_030 Hb_001284_030 Hb_027751_060--Hb_001284_030 Hb_003294_100--Hb_001294_010 Hb_009393_210 Hb_009393_210 Hb_003294_100--Hb_009393_210 Hb_000648_020 Hb_000648_020 Hb_003294_100--Hb_000648_020 Hb_012490_050 Hb_012490_050 Hb_003294_100--Hb_012490_050 Hb_001014_230 Hb_001014_230 Hb_003294_100--Hb_001014_230 Hb_083380_010 Hb_083380_010 Hb_013893_010--Hb_083380_010 Hb_013893_010--Hb_027751_060 Hb_013893_010--Hb_000056_250 Hb_013893_010--Hb_092107_010 Hb_023344_050 Hb_023344_050 Hb_013893_010--Hb_023344_050 Hb_092107_010--Hb_001014_230 Hb_092107_010--Hb_001294_010 Hb_004056_030 Hb_004056_030 Hb_092107_010--Hb_004056_030 Hb_114336_020 Hb_114336_020 Hb_092107_010--Hb_114336_020 Hb_000260_570 Hb_000260_570 Hb_092107_010--Hb_000260_570 Hb_002182_030 Hb_002182_030 Hb_092107_010--Hb_002182_030 Hb_001294_010--Hb_001014_230 Hb_001357_010 Hb_001357_010 Hb_001294_010--Hb_001357_010 Hb_002307_170 Hb_002307_170 Hb_001294_010--Hb_002307_170 Hb_001294_010--Hb_004056_030 Hb_001053_150 Hb_001053_150 Hb_002078_480--Hb_001053_150 Hb_004429_070 Hb_004429_070 Hb_002078_480--Hb_004429_070 Hb_004324_050 Hb_004324_050 Hb_002078_480--Hb_004324_050 Hb_000963_140 Hb_000963_140 Hb_002078_480--Hb_000963_140 Hb_012423_050 Hb_012423_050 Hb_002078_480--Hb_012423_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.24849 2.54431 0.932247 18.7042 4.70365 18.2062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.0414 40.3323 56.9972 20.6972 16.95

CAGE analysis