Hb_003117_060

Information

Type -
Description -
Location Contig3117: 56284-75400
Sequence    

Annotation

kegg
ID cic:CICLE_v10004104mg
description hypothetical protein
nr
ID XP_012073889.1
description PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
swissprot
ID O65782
description Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CYP83B1 PE=1 SV=1
trembl
ID V4TEJ7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004104mg PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 83b1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32966: 56371-58090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003117_060 0.0 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
2 Hb_007666_040 0.0699587878 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
3 Hb_003636_010 0.0899405823 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
4 Hb_000535_030 0.0945248033 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
5 Hb_118777_010 0.0967717234 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
6 Hb_003385_090 0.0998858343 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
7 Hb_106969_010 0.1075374631 - - Cytochrome P450 76C4 [Glycine soja]
8 Hb_000322_200 0.1153985276 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
9 Hb_000116_390 0.119207686 - - Mlo protein [Hevea brasiliensis]
10 Hb_012053_030 0.1212071695 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
11 Hb_012268_010 0.1212251749 - - glutamic acid-rich protein [Manihot esculenta]
12 Hb_018563_040 0.1301645234 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_032651_060 0.1306473491 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_152718_010 0.132315744 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
15 Hb_011909_030 0.1326159889 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
16 Hb_000070_140 0.1337941689 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_001489_030 0.134136358 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
18 Hb_000512_080 0.1346163453 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_005000_220 0.1363072588 - - gulonolactone oxidase, putative [Ricinus communis]
20 Hb_001953_130 0.137663584 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]

Gene co-expression network

sample Hb_003117_060 Hb_003117_060 Hb_007666_040 Hb_007666_040 Hb_003117_060--Hb_007666_040 Hb_003636_010 Hb_003636_010 Hb_003117_060--Hb_003636_010 Hb_000535_030 Hb_000535_030 Hb_003117_060--Hb_000535_030 Hb_118777_010 Hb_118777_010 Hb_003117_060--Hb_118777_010 Hb_003385_090 Hb_003385_090 Hb_003117_060--Hb_003385_090 Hb_106969_010 Hb_106969_010 Hb_003117_060--Hb_106969_010 Hb_007666_040--Hb_003385_090 Hb_007666_040--Hb_000535_030 Hb_012053_030 Hb_012053_030 Hb_007666_040--Hb_012053_030 Hb_001114_210 Hb_001114_210 Hb_007666_040--Hb_001114_210 Hb_001489_030 Hb_001489_030 Hb_007666_040--Hb_001489_030 Hb_003636_010--Hb_118777_010 Hb_000070_140 Hb_000070_140 Hb_003636_010--Hb_000070_140 Hb_000512_080 Hb_000512_080 Hb_003636_010--Hb_000512_080 Hb_003636_010--Hb_106969_010 Hb_079955_010 Hb_079955_010 Hb_003636_010--Hb_079955_010 Hb_000535_030--Hb_003385_090 Hb_032651_060 Hb_032651_060 Hb_000535_030--Hb_032651_060 Hb_000535_030--Hb_001114_210 Hb_001080_040 Hb_001080_040 Hb_000535_030--Hb_001080_040 Hb_152718_010 Hb_152718_010 Hb_118777_010--Hb_152718_010 Hb_001363_030 Hb_001363_030 Hb_118777_010--Hb_001363_030 Hb_118777_010--Hb_106969_010 Hb_118777_010--Hb_000070_140 Hb_003385_090--Hb_032651_060 Hb_003385_090--Hb_001080_040 Hb_049562_010 Hb_049562_010 Hb_003385_090--Hb_049562_010 Hb_003385_090--Hb_001114_210 Hb_011909_030 Hb_011909_030 Hb_106969_010--Hb_011909_030 Hb_001838_010 Hb_001838_010 Hb_106969_010--Hb_001838_010 Hb_000333_130 Hb_000333_130 Hb_106969_010--Hb_000333_130 Hb_000345_190 Hb_000345_190 Hb_106969_010--Hb_000345_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0130302 45.0842 2.81564 1.39138 0.019563 0.00569126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 28.4464 1.36393

CAGE analysis