Hb_003119_030

Information

Type -
Description -
Location Contig3119: 17842-18270
Sequence    

Annotation

kegg
ID mdm:103422999
description classical arabinogalactan protein 1-like
nr
ID XP_012069165.1
description PREDICTED: classical arabinogalactan protein 1-like [Jatropha curcas]
swissprot
ID Q8LCN5
description Classical arabinogalactan protein 1 OS=Arabidopsis thaliana GN=AGP1 PE=2 SV=2
trembl
ID A0A067KXJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003119_030 0.0 - - PREDICTED: classical arabinogalactan protein 1-like [Jatropha curcas]
2 Hb_002391_020 0.1092350414 transcription factor TF Family: NAC PREDICTED: putative NAC domain-containing protein 94 [Jatropha curcas]
3 Hb_171974_010 0.1450108199 - - aldo-keto reductase, putative [Ricinus communis]
4 Hb_108802_010 0.1503410116 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
5 Hb_001405_250 0.1510814538 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
6 Hb_154466_010 0.1589869489 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
7 Hb_175087_010 0.1643873788 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
8 Hb_028841_020 0.1660627278 - - hypothetical protein CISIN_1g041345mg [Citrus sinensis]
9 Hb_158111_010 0.1669147961 - - S-locus-specific glycoprotein precursor, putative [Ricinus communis]
10 Hb_074672_010 0.1730963518 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_002010_020 0.1757376227 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
12 Hb_167186_010 0.1758154044 - - cation-transporting atpase plant, putative [Ricinus communis]
13 Hb_000959_240 0.1778922297 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
14 Hb_067028_010 0.1785044457 - - BnaC03g72040D [Brassica napus]
15 Hb_120011_010 0.1796175684 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
16 Hb_001021_110 0.182714348 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
17 Hb_006395_020 0.1833148964 - - hypothetical protein RCOM_0725510 [Ricinus communis]
18 Hb_001619_140 0.1838749304 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
19 Hb_000025_490 0.1841241373 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
20 Hb_001310_010 0.1859560231 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]

Gene co-expression network

sample Hb_003119_030 Hb_003119_030 Hb_002391_020 Hb_002391_020 Hb_003119_030--Hb_002391_020 Hb_171974_010 Hb_171974_010 Hb_003119_030--Hb_171974_010 Hb_108802_010 Hb_108802_010 Hb_003119_030--Hb_108802_010 Hb_001405_250 Hb_001405_250 Hb_003119_030--Hb_001405_250 Hb_154466_010 Hb_154466_010 Hb_003119_030--Hb_154466_010 Hb_175087_010 Hb_175087_010 Hb_003119_030--Hb_175087_010 Hb_002391_020--Hb_154466_010 Hb_002010_020 Hb_002010_020 Hb_002391_020--Hb_002010_020 Hb_158111_010 Hb_158111_010 Hb_002391_020--Hb_158111_010 Hb_002471_190 Hb_002471_190 Hb_002391_020--Hb_002471_190 Hb_001619_140 Hb_001619_140 Hb_002391_020--Hb_001619_140 Hb_002119_030 Hb_002119_030 Hb_171974_010--Hb_002119_030 Hb_067028_010 Hb_067028_010 Hb_171974_010--Hb_067028_010 Hb_000540_090 Hb_000540_090 Hb_171974_010--Hb_000540_090 Hb_171974_010--Hb_001405_250 Hb_000025_490 Hb_000025_490 Hb_171974_010--Hb_000025_490 Hb_028841_020 Hb_028841_020 Hb_108802_010--Hb_028841_020 Hb_001568_060 Hb_001568_060 Hb_108802_010--Hb_001568_060 Hb_025030_010 Hb_025030_010 Hb_108802_010--Hb_025030_010 Hb_108802_010--Hb_175087_010 Hb_001021_110 Hb_001021_110 Hb_108802_010--Hb_001021_110 Hb_006395_020 Hb_006395_020 Hb_001405_250--Hb_006395_020 Hb_074672_010 Hb_074672_010 Hb_001405_250--Hb_074672_010 Hb_001405_250--Hb_000025_490 Hb_001405_250--Hb_067028_010 Hb_001846_030 Hb_001846_030 Hb_001405_250--Hb_001846_030 Hb_001405_250--Hb_002119_030 Hb_154466_010--Hb_002010_020 Hb_154466_010--Hb_002471_190 Hb_154466_010--Hb_001619_140 Hb_008202_020 Hb_008202_020 Hb_154466_010--Hb_008202_020 Hb_154466_010--Hb_158111_010 Hb_168039_020 Hb_168039_020 Hb_175087_010--Hb_168039_020 Hb_005545_090 Hb_005545_090 Hb_175087_010--Hb_005545_090 Hb_002290_100 Hb_002290_100 Hb_175087_010--Hb_002290_100 Hb_116352_010 Hb_116352_010 Hb_175087_010--Hb_116352_010 Hb_001300_120 Hb_001300_120 Hb_175087_010--Hb_001300_120 Hb_175087_010--Hb_028841_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26404 129.543 71.805 5.74662 0.139559 0.469681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.874212 0.686651 0.448668 12.2095 3.45507

CAGE analysis