Hb_003119_080

Information

Type -
Description -
Location Contig3119: 43820-48746
Sequence    

Annotation

kegg
ID cmo:103501154
description splicing factor 3B subunit 1
nr
ID XP_012069159.1
description PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
swissprot
ID O57683
description Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1
trembl
ID A0A067KXJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24925 PE=4 SV=1
Gene Ontology
ID GO:0009507
description splicing factor 3b subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32976: 44472-48716
cDNA
(Sanger)
(ID:Location)		 025_K15.ab1: 47992-48715

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003119_080 0.0 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
2 Hb_002909_120 0.0593589201 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
3 Hb_011609_150 0.0610360007 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
4 Hb_000406_020 0.0698677846 - - -
5 Hb_000086_690 0.0717220669 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
6 Hb_003211_040 0.0749145045 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
7 Hb_000046_190 0.0760337988 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
8 Hb_002636_110 0.076704054 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
9 Hb_002333_050 0.0831204197 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
10 Hb_000714_040 0.0843828982 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
11 Hb_001401_060 0.087887211 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
12 Hb_005348_010 0.0891650548 - - conserved hypothetical protein [Ricinus communis]
13 Hb_188063_010 0.0894194469 - - hypothetical protein RCOM_1469330 [Ricinus communis]
14 Hb_009486_170 0.0905839979 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
15 Hb_006295_020 0.0930019373 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
16 Hb_002095_070 0.0931126049 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
17 Hb_001133_030 0.0931722841 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
18 Hb_000446_120 0.0941665045 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
19 Hb_002784_110 0.0943374265 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
20 Hb_000015_050 0.09552635 - - hypothetical protein JCGZ_01495 [Jatropha curcas]

Gene co-expression network

sample Hb_003119_080 Hb_003119_080 Hb_002909_120 Hb_002909_120 Hb_003119_080--Hb_002909_120 Hb_011609_150 Hb_011609_150 Hb_003119_080--Hb_011609_150 Hb_000406_020 Hb_000406_020 Hb_003119_080--Hb_000406_020 Hb_000086_690 Hb_000086_690 Hb_003119_080--Hb_000086_690 Hb_003211_040 Hb_003211_040 Hb_003119_080--Hb_003211_040 Hb_000046_190 Hb_000046_190 Hb_003119_080--Hb_000046_190 Hb_002333_050 Hb_002333_050 Hb_002909_120--Hb_002333_050 Hb_002909_120--Hb_000046_190 Hb_009486_170 Hb_009486_170 Hb_002909_120--Hb_009486_170 Hb_188063_010 Hb_188063_010 Hb_002909_120--Hb_188063_010 Hb_001133_030 Hb_001133_030 Hb_002909_120--Hb_001133_030 Hb_011609_150--Hb_003211_040 Hb_007120_060 Hb_007120_060 Hb_011609_150--Hb_007120_060 Hb_011609_150--Hb_000086_690 Hb_014497_020 Hb_014497_020 Hb_011609_150--Hb_014497_020 Hb_002095_070 Hb_002095_070 Hb_011609_150--Hb_002095_070 Hb_001235_230 Hb_001235_230 Hb_000406_020--Hb_001235_230 Hb_000406_020--Hb_000086_690 Hb_000960_100 Hb_000960_100 Hb_000406_020--Hb_000960_100 Hb_002784_110 Hb_002784_110 Hb_000406_020--Hb_002784_110 Hb_000446_120 Hb_000446_120 Hb_000406_020--Hb_000446_120 Hb_000086_690--Hb_009486_170 Hb_000086_690--Hb_001133_030 Hb_000183_050 Hb_000183_050 Hb_000086_690--Hb_000183_050 Hb_001401_060 Hb_001401_060 Hb_000086_690--Hb_001401_060 Hb_011202_020 Hb_011202_020 Hb_000086_690--Hb_011202_020 Hb_007576_210 Hb_007576_210 Hb_003211_040--Hb_007576_210 Hb_003211_040--Hb_002095_070 Hb_011947_050 Hb_011947_050 Hb_003211_040--Hb_011947_050 Hb_003211_040--Hb_002909_120 Hb_003211_040--Hb_009486_170 Hb_009767_080 Hb_009767_080 Hb_000046_190--Hb_009767_080 Hb_019430_020 Hb_019430_020 Hb_000046_190--Hb_019430_020 Hb_005488_170 Hb_005488_170 Hb_000046_190--Hb_005488_170 Hb_005348_010 Hb_005348_010 Hb_000046_190--Hb_005348_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2906 35.5272 11.3619 14.3853 32.9819 26.3056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9476 6.44114 17.0497 31.7182 40.8633

CAGE analysis