Hb_003120_020

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig3120: 4681-10515
Sequence    

Annotation

kegg
ID pmum:103321381
description ABC transporter B family member 13-like
nr
ID XP_008221400.1
description PREDICTED: ABC transporter B family member 13-like [Prunus mume]
swissprot
ID Q9C7F8
description ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1
trembl
ID A0A097P9P4
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCB13 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter b family member 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32991: 5120-10191 , PASA_asmbl_32992: 5408-10191 , PASA_asmbl_32993: 5615-10191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003120_020 0.0 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
2 Hb_000049_100 0.0743765728 - - Photosystem II reaction center W protein, putative [Ricinus communis]
3 Hb_000808_130 0.0766164147 - - 3-5 exonuclease, putative [Ricinus communis]
4 Hb_000881_070 0.0836136154 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_010326_020 0.084627954 - - PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]
6 Hb_001534_060 0.0883747045 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
7 Hb_002375_030 0.0919175001 - - F-box family protein [Populus trichocarpa]
8 Hb_000116_320 0.0925965999 - - protein phosphatase 2c, putative [Ricinus communis]
9 Hb_008195_070 0.0927747409 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_003602_100 0.0934854264 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
11 Hb_001141_340 0.0949651766 - - PREDICTED: cysteine synthase [Jatropha curcas]
12 Hb_003632_020 0.0953743284 - - calcium-binding family protein [Populus trichocarpa]
13 Hb_023344_090 0.0972296923 - - Photosystem II reaction center W protein, putative [Ricinus communis]
14 Hb_017434_040 0.0979663996 - - PREDICTED: uncharacterized oxidoreductase At4g09670-like [Jatropha curcas]
15 Hb_001343_030 0.0999669941 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
16 Hb_001005_140 0.1022280768 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000390_160 0.1022527523 - - PREDICTED: adenosine kinase [Jatropha curcas]
18 Hb_000069_760 0.1035847554 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
19 Hb_000950_020 0.1040114289 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
20 Hb_011724_040 0.1043857413 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]

Gene co-expression network

sample Hb_003120_020 Hb_003120_020 Hb_000049_100 Hb_000049_100 Hb_003120_020--Hb_000049_100 Hb_000808_130 Hb_000808_130 Hb_003120_020--Hb_000808_130 Hb_000881_070 Hb_000881_070 Hb_003120_020--Hb_000881_070 Hb_010326_020 Hb_010326_020 Hb_003120_020--Hb_010326_020 Hb_001534_060 Hb_001534_060 Hb_003120_020--Hb_001534_060 Hb_002375_030 Hb_002375_030 Hb_003120_020--Hb_002375_030 Hb_000390_160 Hb_000390_160 Hb_000049_100--Hb_000390_160 Hb_000254_130 Hb_000254_130 Hb_000049_100--Hb_000254_130 Hb_000049_100--Hb_002375_030 Hb_003632_020 Hb_003632_020 Hb_000049_100--Hb_003632_020 Hb_000049_100--Hb_010326_020 Hb_005000_110 Hb_005000_110 Hb_000808_130--Hb_005000_110 Hb_001343_030 Hb_001343_030 Hb_000808_130--Hb_001343_030 Hb_017434_040 Hb_017434_040 Hb_000808_130--Hb_017434_040 Hb_023344_090 Hb_023344_090 Hb_000808_130--Hb_023344_090 Hb_007597_030 Hb_007597_030 Hb_000808_130--Hb_007597_030 Hb_003020_120 Hb_003020_120 Hb_000881_070--Hb_003020_120 Hb_020648_030 Hb_020648_030 Hb_000881_070--Hb_020648_030 Hb_000881_070--Hb_010326_020 Hb_000881_070--Hb_002375_030 Hb_001717_060 Hb_001717_060 Hb_000881_070--Hb_001717_060 Hb_010326_020--Hb_003632_020 Hb_011724_040 Hb_011724_040 Hb_010326_020--Hb_011724_040 Hb_010326_020--Hb_003020_120 Hb_000230_420 Hb_000230_420 Hb_010326_020--Hb_000230_420 Hb_000369_110 Hb_000369_110 Hb_010326_020--Hb_000369_110 Hb_000731_150 Hb_000731_150 Hb_001534_060--Hb_000731_150 Hb_001534_060--Hb_011724_040 Hb_002328_080 Hb_002328_080 Hb_001534_060--Hb_002328_080 Hb_000512_120 Hb_000512_120 Hb_001534_060--Hb_000512_120 Hb_009707_020 Hb_009707_020 Hb_001534_060--Hb_009707_020 Hb_068580_010 Hb_068580_010 Hb_001534_060--Hb_068580_010 Hb_008195_070 Hb_008195_070 Hb_002375_030--Hb_008195_070 Hb_001006_040 Hb_001006_040 Hb_002375_030--Hb_001006_040 Hb_001292_030 Hb_001292_030 Hb_002375_030--Hb_001292_030 Hb_001975_100 Hb_001975_100 Hb_002375_030--Hb_001975_100 Hb_002375_030--Hb_000254_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.46048 1.44512 82.021 33.731 0.570339 0.360972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.877157 1.19381 1.37334 1.37322 104.17

CAGE analysis