Hb_003120_030

Information

Type -
Description -
Location Contig3120: 10632-13357
Sequence    

Annotation

kegg
ID pop:POPTR_0002s02090g
description POPTRDRAFT_754002; vacuolar protein sorting-associated protein 35
nr
ID XP_012073763.1
description PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
swissprot
ID Q7X659
description Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana GN=VPS35A PE=1 SV=1
trembl
ID E6NTZ8
description Vacuolar protein sorting-associated protein 35 OS=Jatropha curcas GN=JHL20J20.15 PE=3 SV=1
Gene Ontology
ID GO:0030904
description vacuolar protein sorting-associated protein 35

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32995: 11158-11334
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003120_030 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
2 Hb_001329_220 0.0902120795 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000500_090 0.1027599426 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
4 Hb_002333_080 0.1054396581 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
5 Hb_003159_080 0.1103978086 - - PREDICTED: uncharacterized protein LOC105639276 [Jatropha curcas]
6 Hb_003976_010 0.1111908008 - - methionine aminopeptidase, putative [Ricinus communis]
7 Hb_004048_070 0.1126897392 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
8 Hb_005539_030 0.1191251454 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
9 Hb_004970_110 0.1193265649 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
10 Hb_009838_100 0.123017054 - - hypothetical protein RCOM_1217340 [Ricinus communis]
11 Hb_001771_090 0.12382558 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
12 Hb_000291_220 0.1261839232 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha curcas]
13 Hb_002449_020 0.1281340948 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
14 Hb_055590_010 0.1284649784 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000617_020 0.1292009541 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
16 Hb_001184_100 0.1302115961 - - PREDICTED: zinc finger protein 4-like [Populus euphratica]
17 Hb_000174_090 0.1308624518 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
18 Hb_001604_010 0.1316046315 - - 14-3-3 protein, putative [Ricinus communis]
19 Hb_000169_010 0.1320021184 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
20 Hb_006400_030 0.1326948747 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]

Gene co-expression network

sample Hb_003120_030 Hb_003120_030 Hb_001329_220 Hb_001329_220 Hb_003120_030--Hb_001329_220 Hb_000500_090 Hb_000500_090 Hb_003120_030--Hb_000500_090 Hb_002333_080 Hb_002333_080 Hb_003120_030--Hb_002333_080 Hb_003159_080 Hb_003159_080 Hb_003120_030--Hb_003159_080 Hb_003976_010 Hb_003976_010 Hb_003120_030--Hb_003976_010 Hb_004048_070 Hb_004048_070 Hb_003120_030--Hb_004048_070 Hb_000169_010 Hb_000169_010 Hb_001329_220--Hb_000169_010 Hb_001329_220--Hb_000500_090 Hb_007254_040 Hb_007254_040 Hb_001329_220--Hb_007254_040 Hb_000032_570 Hb_000032_570 Hb_001329_220--Hb_000032_570 Hb_001329_220--Hb_004048_070 Hb_004970_110 Hb_004970_110 Hb_001329_220--Hb_004970_110 Hb_000500_090--Hb_002333_080 Hb_007317_180 Hb_007317_180 Hb_000500_090--Hb_007317_180 Hb_000500_090--Hb_007254_040 Hb_000162_170 Hb_000162_170 Hb_000500_090--Hb_000162_170 Hb_000500_090--Hb_004970_110 Hb_002333_080--Hb_004970_110 Hb_002333_080--Hb_001329_220 Hb_002333_080--Hb_007317_180 Hb_011828_020 Hb_011828_020 Hb_002333_080--Hb_011828_020 Hb_004223_090 Hb_004223_090 Hb_003159_080--Hb_004223_090 Hb_005539_030 Hb_005539_030 Hb_003159_080--Hb_005539_030 Hb_015292_030 Hb_015292_030 Hb_003159_080--Hb_015292_030 Hb_000003_160 Hb_000003_160 Hb_003159_080--Hb_000003_160 Hb_039946_020 Hb_039946_020 Hb_003159_080--Hb_039946_020 Hb_003159_080--Hb_000169_010 Hb_022216_020 Hb_022216_020 Hb_003976_010--Hb_022216_020 Hb_006400_030 Hb_006400_030 Hb_003976_010--Hb_006400_030 Hb_015001_020 Hb_015001_020 Hb_003976_010--Hb_015001_020 Hb_172632_090 Hb_172632_090 Hb_003976_010--Hb_172632_090 Hb_001604_010 Hb_001604_010 Hb_003976_010--Hb_001604_010 Hb_007426_230 Hb_007426_230 Hb_003976_010--Hb_007426_230 Hb_015746_010 Hb_015746_010 Hb_004048_070--Hb_015746_010 Hb_032717_080 Hb_032717_080 Hb_004048_070--Hb_032717_080 Hb_004048_070--Hb_004970_110 Hb_004048_070--Hb_007254_040 Hb_001135_050 Hb_001135_050 Hb_004048_070--Hb_001135_050 Hb_004048_070--Hb_005539_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.41605 0.358159 0.271055 0.548046 1.67959 1.40691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.86911 1.38599 1.1563 1.9782 0.256966

CAGE analysis