Hb_003120_090

Information

Type -
Description -
Location Contig3120: 50021-56738
Sequence    

Annotation

kegg
ID vvi:100264374
description uncharacterized LOC100264374
nr
ID XP_010664850.1
description PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]
swissprot
ID Q9FHW9
description GDSL esterase/lipase At5g42170 OS=Arabidopsis thaliana GN=At5g42170/At5g42160 PE=3 SV=2
trembl
ID A0A067E3Z6
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045030mg PE=4 SV=1
Gene Ontology
ID GO:0016298
description gdsl esterase lipase exl3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003120_090 0.0 - - PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]
2 Hb_005018_050 0.0206497184 - - PREDICTED: licodione synthase-like [Jatropha curcas]
3 Hb_003407_050 0.0270284455 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
4 Hb_002704_090 0.0325153935 - - cytochrome P450, putative [Ricinus communis]
5 Hb_007933_010 0.0344766382 - - ATP-binding cassette transporter, putative [Ricinus communis]
6 Hb_031194_030 0.0400679619 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
7 Hb_000853_280 0.0409004968 - - PREDICTED: extensin-like [Jatropha curcas]
8 Hb_002093_010 0.0431175073 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]
9 Hb_000627_060 0.057212766 - - -
10 Hb_088080_010 0.0576164889 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
11 Hb_007595_030 0.0616807566 - - psbA gene product (chloroplast) [Silene noctiflora]
12 Hb_000938_050 0.0659833255 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
13 Hb_006435_020 0.0679925412 - - sugar transporter, putative [Ricinus communis]
14 Hb_007741_060 0.0712970819 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
15 Hb_126973_010 0.0726682571 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
16 Hb_002835_420 0.0773749723 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
17 Hb_007645_050 0.078850654 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
18 Hb_154980_010 0.0847070594 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
19 Hb_002276_110 0.0853307944 - - protein binding protein, putative [Ricinus communis]
20 Hb_059280_010 0.0853538413 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]

Gene co-expression network

sample Hb_003120_090 Hb_003120_090 Hb_005018_050 Hb_005018_050 Hb_003120_090--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_003120_090--Hb_003407_050 Hb_002704_090 Hb_002704_090 Hb_003120_090--Hb_002704_090 Hb_007933_010 Hb_007933_010 Hb_003120_090--Hb_007933_010 Hb_031194_030 Hb_031194_030 Hb_003120_090--Hb_031194_030 Hb_000853_280 Hb_000853_280 Hb_003120_090--Hb_000853_280 Hb_005018_050--Hb_003407_050 Hb_005018_050--Hb_031194_030 Hb_005018_050--Hb_002704_090 Hb_005018_050--Hb_007933_010 Hb_088080_010 Hb_088080_010 Hb_005018_050--Hb_088080_010 Hb_003407_050--Hb_031194_030 Hb_003407_050--Hb_002704_090 Hb_003407_050--Hb_088080_010 Hb_007595_030 Hb_007595_030 Hb_003407_050--Hb_007595_030 Hb_002093_010 Hb_002093_010 Hb_002704_090--Hb_002093_010 Hb_000627_060 Hb_000627_060 Hb_002704_090--Hb_000627_060 Hb_002704_090--Hb_007933_010 Hb_002704_090--Hb_031194_030 Hb_007933_010--Hb_000853_280 Hb_007933_010--Hb_002093_010 Hb_007933_010--Hb_000627_060 Hb_031194_030--Hb_088080_010 Hb_031194_030--Hb_007595_030 Hb_000853_280--Hb_002093_010 Hb_000853_280--Hb_002704_090 Hb_000853_280--Hb_005018_050 Hb_000853_280--Hb_000627_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.12411 0.0368007 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.37964

CAGE analysis