Hb_003124_060

Information

Type -
Description -
Location Contig3124: 21726-29301
Sequence    

Annotation

kegg
ID rcu:RCOM_0449350
description Beta-ureidopropionase, putative (EC:3.5.1.6)
nr
ID XP_002532764.1
description Beta-ureidopropionase, putative [Ricinus communis]
swissprot
ID Q8H183
description Beta-ureidopropionase OS=Arabidopsis thaliana GN=PYD3 PE=1 SV=1
trembl
ID B9T3E5
description Beta-ureidopropionase, putative OS=Ricinus communis GN=RCOM_0449350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003124_060 0.0 - - Beta-ureidopropionase, putative [Ricinus communis]
2 Hb_001163_090 0.1158430125 - - hypothetical protein POPTR_0009s14920g [Populus trichocarpa]
3 Hb_000281_230 0.1915187229 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
4 Hb_000906_130 0.201779663 - - -
5 Hb_006342_020 0.2059993096 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_004734_050 0.2193772642 - - -
7 Hb_115940_010 0.2231763253 - - putative auxin-amidohydrolase precursor family protein [Populus trichocarpa]
8 Hb_001159_200 0.225345724 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
9 Hb_005224_030 0.2392562027 - - Dipeptide transport ATP-binding protein dppF [Theobroma cacao]
10 Hb_004635_060 0.2417455752 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
11 Hb_000731_250 0.247459236 - - -
12 Hb_003784_050 0.2481647602 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
13 Hb_006745_060 0.2495891337 - - -
14 Hb_001153_020 0.2496347248 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
15 Hb_003086_060 0.2499190068 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
16 Hb_148209_060 0.2527110304 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
17 Hb_000084_320 0.2537955164 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
18 Hb_088538_010 0.2538307471 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
19 Hb_007576_030 0.2552517347 - - -
20 Hb_000258_450 0.2563388605 - - -

Gene co-expression network

sample Hb_003124_060 Hb_003124_060 Hb_001163_090 Hb_001163_090 Hb_003124_060--Hb_001163_090 Hb_000281_230 Hb_000281_230 Hb_003124_060--Hb_000281_230 Hb_000906_130 Hb_000906_130 Hb_003124_060--Hb_000906_130 Hb_006342_020 Hb_006342_020 Hb_003124_060--Hb_006342_020 Hb_004734_050 Hb_004734_050 Hb_003124_060--Hb_004734_050 Hb_115940_010 Hb_115940_010 Hb_003124_060--Hb_115940_010 Hb_132998_010 Hb_132998_010 Hb_001163_090--Hb_132998_010 Hb_001163_090--Hb_000281_230 Hb_001163_090--Hb_115940_010 Hb_001163_090--Hb_006342_020 Hb_004635_060 Hb_004635_060 Hb_001163_090--Hb_004635_060 Hb_001159_200 Hb_001159_200 Hb_000281_230--Hb_001159_200 Hb_000281_230--Hb_004635_060 Hb_001369_400 Hb_001369_400 Hb_000281_230--Hb_001369_400 Hb_000819_070 Hb_000819_070 Hb_000281_230--Hb_000819_070 Hb_000318_490 Hb_000318_490 Hb_000281_230--Hb_000318_490 Hb_004223_260 Hb_004223_260 Hb_000281_230--Hb_004223_260 Hb_000731_250 Hb_000731_250 Hb_000906_130--Hb_000731_250 Hb_000084_320 Hb_000084_320 Hb_000906_130--Hb_000084_320 Hb_088538_010 Hb_088538_010 Hb_000906_130--Hb_088538_010 Hb_005224_030 Hb_005224_030 Hb_000906_130--Hb_005224_030 Hb_000906_130--Hb_004734_050 Hb_005054_270 Hb_005054_270 Hb_006342_020--Hb_005054_270 Hb_006342_020--Hb_115940_010 Hb_006342_020--Hb_000084_320 Hb_006342_020--Hb_001159_200 Hb_000592_060 Hb_000592_060 Hb_006342_020--Hb_000592_060 Hb_003376_290 Hb_003376_290 Hb_006342_020--Hb_003376_290 Hb_181240_010 Hb_181240_010 Hb_004734_050--Hb_181240_010 Hb_004448_060 Hb_004448_060 Hb_004734_050--Hb_004448_060 Hb_000915_030 Hb_000915_030 Hb_004734_050--Hb_000915_030 Hb_042202_050 Hb_042202_050 Hb_004734_050--Hb_042202_050 Hb_011484_010 Hb_011484_010 Hb_004734_050--Hb_011484_010 Hb_073866_010 Hb_073866_010 Hb_115940_010--Hb_073866_010 Hb_156182_010 Hb_156182_010 Hb_115940_010--Hb_156182_010 Hb_115940_010--Hb_005054_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0926866 0.0338483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.571893 0.622852 0.384834 0.138797 0.213995

CAGE analysis