Hb_003124_150

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig3124: 71417-76963
Sequence    

Annotation

kegg
ID tcc:TCM_007360
description Zim-like 2
nr
ID XP_012081378.1
description PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
swissprot
ID Q8GXL7
description GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2
trembl
ID A0A067K192
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18763 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 24-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33026: 71434-76951
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003124_150 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
2 Hb_000310_020 0.0663297266 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
3 Hb_000928_070 0.0699437928 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
4 Hb_000505_130 0.0699567556 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
5 Hb_000729_030 0.0727275705 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
6 Hb_000336_150 0.0739041263 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
7 Hb_000580_020 0.0741730686 - - unnamed protein product [Vitis vinifera]
8 Hb_003582_060 0.0785283171 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
9 Hb_000733_180 0.0795530522 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
10 Hb_001019_100 0.0798115695 - - BnaC02g13240D [Brassica napus]
11 Hb_000221_190 0.0802315273 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
12 Hb_001541_120 0.0802826189 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
13 Hb_019280_050 0.0806485103 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
14 Hb_003878_090 0.080753513 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
15 Hb_006615_240 0.0817030634 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
16 Hb_005167_010 0.0834793642 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
17 Hb_010368_010 0.0835975784 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
18 Hb_001287_040 0.0841141852 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
19 Hb_000309_130 0.0841306136 - - hypothetical protein JCGZ_09592 [Jatropha curcas]
20 Hb_006132_090 0.0844289728 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003124_150 Hb_003124_150 Hb_000310_020 Hb_000310_020 Hb_003124_150--Hb_000310_020 Hb_000928_070 Hb_000928_070 Hb_003124_150--Hb_000928_070 Hb_000505_130 Hb_000505_130 Hb_003124_150--Hb_000505_130 Hb_000729_030 Hb_000729_030 Hb_003124_150--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003124_150--Hb_000336_150 Hb_000580_020 Hb_000580_020 Hb_003124_150--Hb_000580_020 Hb_000310_020--Hb_000505_130 Hb_000221_190 Hb_000221_190 Hb_000310_020--Hb_000221_190 Hb_000161_130 Hb_000161_130 Hb_000310_020--Hb_000161_130 Hb_006615_240 Hb_006615_240 Hb_000310_020--Hb_006615_240 Hb_004324_090 Hb_004324_090 Hb_000310_020--Hb_004324_090 Hb_001541_120 Hb_001541_120 Hb_000928_070--Hb_001541_120 Hb_000288_030 Hb_000288_030 Hb_000928_070--Hb_000288_030 Hb_000856_010 Hb_000856_010 Hb_000928_070--Hb_000856_010 Hb_012022_040 Hb_012022_040 Hb_000928_070--Hb_012022_040 Hb_003582_060 Hb_003582_060 Hb_000928_070--Hb_003582_060 Hb_000140_090 Hb_000140_090 Hb_000928_070--Hb_000140_090 Hb_001931_010 Hb_001931_010 Hb_000505_130--Hb_001931_010 Hb_000505_130--Hb_000221_190 Hb_044653_040 Hb_044653_040 Hb_000505_130--Hb_044653_040 Hb_006326_040 Hb_006326_040 Hb_000505_130--Hb_006326_040 Hb_000869_080 Hb_000869_080 Hb_000729_030--Hb_000869_080 Hb_000261_020 Hb_000261_020 Hb_000729_030--Hb_000261_020 Hb_000729_030--Hb_000336_150 Hb_013358_040 Hb_013358_040 Hb_000729_030--Hb_013358_040 Hb_010368_010 Hb_010368_010 Hb_000729_030--Hb_010368_010 Hb_007304_120 Hb_007304_120 Hb_000336_150--Hb_007304_120 Hb_000336_150--Hb_006615_240 Hb_000336_150--Hb_003582_060 Hb_000205_090 Hb_000205_090 Hb_000336_150--Hb_000205_090 Hb_004109_170 Hb_004109_170 Hb_000336_150--Hb_004109_170 Hb_000580_020--Hb_000310_020 Hb_000580_020--Hb_000505_130 Hb_012565_070 Hb_012565_070 Hb_000580_020--Hb_012565_070 Hb_000580_020--Hb_001931_010 Hb_005167_010 Hb_005167_010 Hb_000580_020--Hb_005167_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3998 18.1855 30.4819 20.1569 12.9842 13.6226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.5025 36.3566 27.2538 15.361 25.751

CAGE analysis