Hb_003124_160

Information

Type -
Description -
Location Contig3124: 77429-87507
Sequence    

Annotation

kegg
ID rcu:RCOM_0449340
description dynamin, putative
nr
ID XP_002532763.1
description dynamin, putative [Ricinus communis]
swissprot
ID Q8S944
description Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2
trembl
ID B9T3E4
description Dynamin, putative OS=Ricinus communis GN=RCOM_0449340 PE=3 SV=1
Gene Ontology
ID GO:0003924
description dynamin-related protein 3a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33029: 77454-86215 , PASA_asmbl_33031: 86379-87032 , PASA_asmbl_33032: 87035-87423
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003124_160 0.0 - - dynamin, putative [Ricinus communis]
2 Hb_000176_130 0.0544202679 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
3 Hb_004429_010 0.0549270778 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_002027_280 0.0563009269 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
5 Hb_011202_020 0.0587749544 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
6 Hb_005402_040 0.0590417149 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
7 Hb_000261_030 0.0626739908 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
8 Hb_005357_260 0.0632879023 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
9 Hb_005832_010 0.064368675 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
10 Hb_009252_050 0.0654405622 - - protein binding protein, putative [Ricinus communis]
11 Hb_001235_230 0.0673697827 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
12 Hb_001673_050 0.0676534183 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
13 Hb_002475_040 0.0692899751 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
14 Hb_012055_110 0.0705185142 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
15 Hb_000176_100 0.0717757404 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
16 Hb_001318_070 0.0721013554 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
17 Hb_000917_160 0.0723161143 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
18 Hb_000086_150 0.0723192056 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
19 Hb_133702_020 0.072338452 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_001085_110 0.0724460652 - - T6D22.2 [Arabidopsis thaliana]

Gene co-expression network

sample Hb_003124_160 Hb_003124_160 Hb_000176_130 Hb_000176_130 Hb_003124_160--Hb_000176_130 Hb_004429_010 Hb_004429_010 Hb_003124_160--Hb_004429_010 Hb_002027_280 Hb_002027_280 Hb_003124_160--Hb_002027_280 Hb_011202_020 Hb_011202_020 Hb_003124_160--Hb_011202_020 Hb_005402_040 Hb_005402_040 Hb_003124_160--Hb_005402_040 Hb_000261_030 Hb_000261_030 Hb_003124_160--Hb_000261_030 Hb_001235_230 Hb_001235_230 Hb_000176_130--Hb_001235_230 Hb_000176_130--Hb_011202_020 Hb_000176_130--Hb_000261_030 Hb_002044_170 Hb_002044_170 Hb_000176_130--Hb_002044_170 Hb_001401_060 Hb_001401_060 Hb_000176_130--Hb_001401_060 Hb_004429_010--Hb_002027_280 Hb_002092_070 Hb_002092_070 Hb_004429_010--Hb_002092_070 Hb_009252_050 Hb_009252_050 Hb_004429_010--Hb_009252_050 Hb_002284_170 Hb_002284_170 Hb_004429_010--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_004429_010--Hb_001221_090 Hb_001904_030 Hb_001904_030 Hb_002027_280--Hb_001904_030 Hb_001673_050 Hb_001673_050 Hb_002027_280--Hb_001673_050 Hb_001277_300 Hb_001277_300 Hb_002027_280--Hb_001277_300 Hb_000352_070 Hb_000352_070 Hb_002027_280--Hb_000352_070 Hb_011202_020--Hb_001235_230 Hb_011202_020--Hb_005402_040 Hb_005357_260 Hb_005357_260 Hb_011202_020--Hb_005357_260 Hb_011202_020--Hb_000261_030 Hb_009486_170 Hb_009486_170 Hb_011202_020--Hb_009486_170 Hb_027472_220 Hb_027472_220 Hb_005402_040--Hb_027472_220 Hb_005402_040--Hb_005357_260 Hb_000025_710 Hb_000025_710 Hb_005402_040--Hb_000025_710 Hb_000395_070 Hb_000395_070 Hb_005402_040--Hb_000395_070 Hb_000740_100 Hb_000740_100 Hb_000261_030--Hb_000740_100 Hb_000035_410 Hb_000035_410 Hb_000261_030--Hb_000035_410 Hb_000261_030--Hb_001235_230 Hb_004453_110 Hb_004453_110 Hb_000261_030--Hb_004453_110 Hb_002329_040 Hb_002329_040 Hb_000261_030--Hb_002329_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0551 23.1045 13.5562 15.0186 17.9689 17.3264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.39633 5.92686 7.00769 16.4943 17.9364

CAGE analysis