Hb_003124_180

Information

Type -
Description -
Location Contig3124: 92578-108935
Sequence    

Annotation

kegg
ID rcu:RCOM_0449300
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002532759.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID C0LGU5
description Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1
trembl
ID B9T3E0
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0449300 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase pbs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003124_180 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000402_110 0.2582815239 - - hypothetical protein JCGZ_17786 [Jatropha curcas]
3 Hb_000613_150 0.2654458821 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
4 Hb_001632_030 0.2748074216 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
5 Hb_002701_190 0.3067664854 - - PREDICTED: uncharacterized protein LOC105646742 [Jatropha curcas]
6 Hb_000890_090 0.3091612246 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
7 Hb_006655_040 0.3234774366 - - tau class glutathione transferase GSTU15 [Populus trichocarpa]
8 Hb_001332_030 0.3274499658 - - hypothetical protein JCGZ_21111 [Jatropha curcas]
9 Hb_026740_010 0.3342581785 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
10 Hb_001437_090 0.3360607281 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit [Jatropha curcas]
11 Hb_023936_010 0.340467612 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010815_050 0.3441482705 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
13 Hb_000317_530 0.3449341248 - - hypothetical protein, partial [Pseudomonas fluorescens]
14 Hb_012368_070 0.3496578794 - - RNA binding protein, putative [Ricinus communis]
15 Hb_000693_020 0.3550812136 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
16 Hb_000599_310 0.3551742028 - - PREDICTED: pleckstrin homology domain-containing family A member 8-like [Jatropha curcas]
17 Hb_002282_040 0.3585699827 - - hypothetical protein VITISV_030841 [Vitis vinifera]
18 Hb_123199_010 0.3591606489 - - SRK protein [Brassica cretica]
19 Hb_009393_190 0.3608493908 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
20 Hb_002791_040 0.3645223693 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_003124_180 Hb_003124_180 Hb_000402_110 Hb_000402_110 Hb_003124_180--Hb_000402_110 Hb_000613_150 Hb_000613_150 Hb_003124_180--Hb_000613_150 Hb_001632_030 Hb_001632_030 Hb_003124_180--Hb_001632_030 Hb_002701_190 Hb_002701_190 Hb_003124_180--Hb_002701_190 Hb_000890_090 Hb_000890_090 Hb_003124_180--Hb_000890_090 Hb_006655_040 Hb_006655_040 Hb_003124_180--Hb_006655_040 Hb_000402_110--Hb_000613_150 Hb_000317_530 Hb_000317_530 Hb_000402_110--Hb_000317_530 Hb_002282_040 Hb_002282_040 Hb_000402_110--Hb_002282_040 Hb_003095_090 Hb_003095_090 Hb_000402_110--Hb_003095_090 Hb_003626_010 Hb_003626_010 Hb_000402_110--Hb_003626_010 Hb_000613_150--Hb_000317_530 Hb_012163_030 Hb_012163_030 Hb_000613_150--Hb_012163_030 Hb_000613_150--Hb_001632_030 Hb_026740_010 Hb_026740_010 Hb_000613_150--Hb_026740_010 Hb_001632_030--Hb_012163_030 Hb_185224_010 Hb_185224_010 Hb_001632_030--Hb_185224_010 Hb_001632_030--Hb_026740_010 Hb_001632_030--Hb_000317_530 Hb_000139_430 Hb_000139_430 Hb_002701_190--Hb_000139_430 Hb_164646_010 Hb_164646_010 Hb_002701_190--Hb_164646_010 Hb_000042_360 Hb_000042_360 Hb_002701_190--Hb_000042_360 Hb_004679_060 Hb_004679_060 Hb_002701_190--Hb_004679_060 Hb_001591_010 Hb_001591_010 Hb_002701_190--Hb_001591_010 Hb_006028_020 Hb_006028_020 Hb_002701_190--Hb_006028_020 Hb_000890_090--Hb_026740_010 Hb_000172_160 Hb_000172_160 Hb_000890_090--Hb_000172_160 Hb_044555_010 Hb_044555_010 Hb_000890_090--Hb_044555_010 Hb_000599_310 Hb_000599_310 Hb_000890_090--Hb_000599_310 Hb_001828_030 Hb_001828_030 Hb_000890_090--Hb_001828_030 Hb_000809_070 Hb_000809_070 Hb_006655_040--Hb_000809_070 Hb_006655_040--Hb_003095_090 Hb_006655_040--Hb_003626_010 Hb_160246_010 Hb_160246_010 Hb_006655_040--Hb_160246_010 Hb_007451_080 Hb_007451_080 Hb_006655_040--Hb_007451_080 Hb_002374_500 Hb_002374_500 Hb_006655_040--Hb_002374_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.066592 0.00858671 0 0.00968296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0251489 0.0593614 0 0.0472796 0

CAGE analysis