Hb_003124_210

Information

Type -
Description -
Location Contig3124: 158674-159263
Sequence    

Annotation

kegg
ID rcu:RCOM_1155880
description hypothetical protein
nr
ID XP_002524970.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID B9SG51
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1155880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33033: 160051-164512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003124_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000016_120 0.2284935846 - - PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
3 Hb_004289_040 0.255557067 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
4 Hb_000545_120 0.2567756006 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_000375_180 0.282511235 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
6 Hb_001604_050 0.2840534304 - - PREDICTED: uncharacterized protein LOC105639208 [Jatropha curcas]
7 Hb_049944_010 0.2901297382 - - transducin family protein [Populus trichocarpa]
8 Hb_002811_340 0.3045925685 - - PREDICTED: ammonium transporter 3 member 2-like [Populus euphratica]
9 Hb_012938_010 0.3140680472 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_000002_420 0.3238610355 - - PREDICTED: serine/threonine-protein kinase BLUS1-like [Citrus sinensis]
11 Hb_012218_020 0.3337540892 - - hypothetical protein JCGZ_14688 [Jatropha curcas]
12 Hb_001733_060 0.3356807348 - - PREDICTED: uncharacterized protein LOC104431099 [Eucalyptus grandis]
13 Hb_171469_010 0.3427480128 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
14 Hb_001912_070 0.3475193403 - - hypothetical protein POPTR_0003s03380g [Populus trichocarpa]
15 Hb_002602_020 0.3479259964 - - -
16 Hb_008191_010 0.3581537202 - - -
17 Hb_003416_050 0.3635361696 - - -
18 Hb_005654_010 0.3670986482 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_187951_010 0.3676367248 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_112046_010 0.3702475016 - - PREDICTED: uncharacterized protein LOC105772042 [Gossypium raimondii]

Gene co-expression network

sample Hb_003124_210 Hb_003124_210 Hb_000016_120 Hb_000016_120 Hb_003124_210--Hb_000016_120 Hb_004289_040 Hb_004289_040 Hb_003124_210--Hb_004289_040 Hb_000545_120 Hb_000545_120 Hb_003124_210--Hb_000545_120 Hb_000375_180 Hb_000375_180 Hb_003124_210--Hb_000375_180 Hb_001604_050 Hb_001604_050 Hb_003124_210--Hb_001604_050 Hb_049944_010 Hb_049944_010 Hb_003124_210--Hb_049944_010 Hb_012938_010 Hb_012938_010 Hb_000016_120--Hb_012938_010 Hb_000016_120--Hb_000545_120 Hb_000016_120--Hb_000375_180 Hb_005654_010 Hb_005654_010 Hb_000016_120--Hb_005654_010 Hb_008191_010 Hb_008191_010 Hb_000016_120--Hb_008191_010 Hb_032705_020 Hb_032705_020 Hb_004289_040--Hb_032705_020 Hb_145157_010 Hb_145157_010 Hb_004289_040--Hb_145157_010 Hb_004289_040--Hb_000545_120 Hb_014440_010 Hb_014440_010 Hb_004289_040--Hb_014440_010 Hb_002811_340 Hb_002811_340 Hb_004289_040--Hb_002811_340 Hb_000545_120--Hb_000375_180 Hb_000545_120--Hb_012938_010 Hb_000545_120--Hb_005654_010 Hb_000375_180--Hb_005654_010 Hb_000375_180--Hb_012938_010 Hb_071130_040 Hb_071130_040 Hb_000375_180--Hb_071130_040 Hb_001335_050 Hb_001335_050 Hb_000375_180--Hb_001335_050 Hb_184403_020 Hb_184403_020 Hb_001604_050--Hb_184403_020 Hb_000375_310 Hb_000375_310 Hb_001604_050--Hb_000375_310 Hb_171469_010 Hb_171469_010 Hb_001604_050--Hb_171469_010 Hb_001950_120 Hb_001950_120 Hb_001604_050--Hb_001950_120 Hb_101133_020 Hb_101133_020 Hb_001604_050--Hb_101133_020 Hb_000449_040 Hb_000449_040 Hb_001604_050--Hb_000449_040 Hb_137461_010 Hb_137461_010 Hb_049944_010--Hb_137461_010 Hb_005839_050 Hb_005839_050 Hb_049944_010--Hb_005839_050 Hb_003964_090 Hb_003964_090 Hb_049944_010--Hb_003964_090 Hb_004137_080 Hb_004137_080 Hb_049944_010--Hb_004137_080 Hb_027472_030 Hb_027472_030 Hb_049944_010--Hb_027472_030 Hb_001912_070 Hb_001912_070 Hb_049944_010--Hb_001912_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.150097 0 0 0.134546 0.4018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.336814 0.396831 0 0 0.478302

CAGE analysis