Hb_003124_270

Information

Type transcription factor
Description TF Family: LUG
Location Contig3124: 189366-211871
Sequence    

Annotation

kegg
ID cam:101503952
description transcriptional corepressor LEUNIG-like
nr
ID KDP32298.1
description hypothetical protein JCGZ_13223 [Jatropha curcas]
swissprot
ID Q9FUY2
description Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2
trembl
ID A0A067KBC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13223 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33035: 189417-208944 , PASA_asmbl_33036: 208947-210423 , PASA_asmbl_33037: 211445-211861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003124_270 0.0 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
2 Hb_000844_050 0.0466768786 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
3 Hb_004884_090 0.0477622552 - - importin beta-1, putative [Ricinus communis]
4 Hb_007012_040 0.0512690617 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
5 Hb_005181_050 0.0590452128 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
6 Hb_000809_250 0.0625370141 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
7 Hb_003680_020 0.0658349625 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_002078_470 0.0699721004 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
9 Hb_009476_120 0.0724178691 - - Clathrin heavy chain 1 [Glycine soja]
10 Hb_004586_090 0.0725977857 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
11 Hb_048476_080 0.0739420887 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
12 Hb_008165_020 0.0748071771 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
13 Hb_000960_080 0.0763743673 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
14 Hb_000167_120 0.0766643769 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
15 Hb_002686_140 0.0783859014 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
16 Hb_003661_010 0.0801313103 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
17 Hb_001507_050 0.0822771853 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000331_100 0.0852290332 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
19 Hb_004551_020 0.0862808247 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
20 Hb_000154_130 0.0868181469 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003124_270 Hb_003124_270 Hb_000844_050 Hb_000844_050 Hb_003124_270--Hb_000844_050 Hb_004884_090 Hb_004884_090 Hb_003124_270--Hb_004884_090 Hb_007012_040 Hb_007012_040 Hb_003124_270--Hb_007012_040 Hb_005181_050 Hb_005181_050 Hb_003124_270--Hb_005181_050 Hb_000809_250 Hb_000809_250 Hb_003124_270--Hb_000809_250 Hb_003680_020 Hb_003680_020 Hb_003124_270--Hb_003680_020 Hb_048476_080 Hb_048476_080 Hb_000844_050--Hb_048476_080 Hb_003661_010 Hb_003661_010 Hb_000844_050--Hb_003661_010 Hb_000844_050--Hb_003680_020 Hb_000844_050--Hb_000809_250 Hb_001507_050 Hb_001507_050 Hb_000844_050--Hb_001507_050 Hb_004884_090--Hb_007012_040 Hb_004884_090--Hb_005181_050 Hb_004884_090--Hb_000809_250 Hb_009476_120 Hb_009476_120 Hb_004884_090--Hb_009476_120 Hb_033799_010 Hb_033799_010 Hb_004884_090--Hb_033799_010 Hb_171554_040 Hb_171554_040 Hb_007012_040--Hb_171554_040 Hb_000154_130 Hb_000154_130 Hb_007012_040--Hb_000154_130 Hb_004551_020 Hb_004551_020 Hb_007012_040--Hb_004551_020 Hb_000445_130 Hb_000445_130 Hb_007012_040--Hb_000445_130 Hb_000167_120 Hb_000167_120 Hb_005181_050--Hb_000167_120 Hb_005181_050--Hb_003680_020 Hb_000125_180 Hb_000125_180 Hb_005181_050--Hb_000125_180 Hb_005181_050--Hb_000844_050 Hb_005181_050--Hb_000809_250 Hb_000809_250--Hb_003680_020 Hb_001998_150 Hb_001998_150 Hb_000809_250--Hb_001998_150 Hb_000809_250--Hb_003661_010 Hb_000960_080 Hb_000960_080 Hb_003680_020--Hb_000960_080 Hb_003680_020--Hb_001507_050 Hb_003680_020--Hb_003661_010 Hb_003680_020--Hb_048476_080 Hb_000059_240 Hb_000059_240 Hb_003680_020--Hb_000059_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.2199 20.9247 11.7667 14.662 5.08667 6.36832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.38776 4.8597 7.07226 14.5075 21.1655

CAGE analysis