Hb_003125_010

Information

Type -
Description -
Location Contig3125: 8628-12012
Sequence    

Annotation

kegg
ID rcu:RCOM_1506500
description DNA binding protein, putative
nr
ID XP_012079846.1
description PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RAH0
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1506500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_010 0.0 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
2 Hb_001369_690 0.060057706 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
3 Hb_010504_020 0.0646909543 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
4 Hb_012799_160 0.0651326373 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
5 Hb_002473_130 0.0686781406 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
6 Hb_172426_040 0.0704879001 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
7 Hb_025240_040 0.070528999 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
8 Hb_032202_190 0.0709092842 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
9 Hb_000331_450 0.071301052 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
10 Hb_002477_330 0.0721367107 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
11 Hb_004218_110 0.0727099102 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
12 Hb_012053_070 0.0732051986 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
13 Hb_004254_120 0.0733290617 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002759_060 0.0741493126 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
15 Hb_000107_310 0.0744711514 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
16 Hb_000477_060 0.075057286 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
17 Hb_000421_220 0.0750950427 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
18 Hb_000479_190 0.075833845 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001009_270 0.0776230884 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
20 Hb_001789_070 0.0778455951 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_003125_010 Hb_003125_010 Hb_001369_690 Hb_001369_690 Hb_003125_010--Hb_001369_690 Hb_010504_020 Hb_010504_020 Hb_003125_010--Hb_010504_020 Hb_012799_160 Hb_012799_160 Hb_003125_010--Hb_012799_160 Hb_002473_130 Hb_002473_130 Hb_003125_010--Hb_002473_130 Hb_172426_040 Hb_172426_040 Hb_003125_010--Hb_172426_040 Hb_025240_040 Hb_025240_040 Hb_003125_010--Hb_025240_040 Hb_004218_110 Hb_004218_110 Hb_001369_690--Hb_004218_110 Hb_000331_450 Hb_000331_450 Hb_001369_690--Hb_000331_450 Hb_015934_070 Hb_015934_070 Hb_001369_690--Hb_015934_070 Hb_012053_070 Hb_012053_070 Hb_001369_690--Hb_012053_070 Hb_001369_690--Hb_025240_040 Hb_005305_080 Hb_005305_080 Hb_010504_020--Hb_005305_080 Hb_000510_130 Hb_000510_130 Hb_010504_020--Hb_000510_130 Hb_020956_020 Hb_020956_020 Hb_010504_020--Hb_020956_020 Hb_002477_330 Hb_002477_330 Hb_010504_020--Hb_002477_330 Hb_159809_020 Hb_159809_020 Hb_010504_020--Hb_159809_020 Hb_000959_260 Hb_000959_260 Hb_010504_020--Hb_000959_260 Hb_001789_070 Hb_001789_070 Hb_012799_160--Hb_001789_070 Hb_002207_110 Hb_002207_110 Hb_012799_160--Hb_002207_110 Hb_000529_190 Hb_000529_190 Hb_012799_160--Hb_000529_190 Hb_000479_190 Hb_000479_190 Hb_012799_160--Hb_000479_190 Hb_012799_160--Hb_025240_040 Hb_002271_020 Hb_002271_020 Hb_002473_130--Hb_002271_020 Hb_003226_140 Hb_003226_140 Hb_002473_130--Hb_003226_140 Hb_143398_010 Hb_143398_010 Hb_002473_130--Hb_143398_010 Hb_005291_030 Hb_005291_030 Hb_002473_130--Hb_005291_030 Hb_001279_150 Hb_001279_150 Hb_002473_130--Hb_001279_150 Hb_005489_060 Hb_005489_060 Hb_002473_130--Hb_005489_060 Hb_003918_010 Hb_003918_010 Hb_172426_040--Hb_003918_010 Hb_003787_010 Hb_003787_010 Hb_172426_040--Hb_003787_010 Hb_006059_050 Hb_006059_050 Hb_172426_040--Hb_006059_050 Hb_000020_060 Hb_000020_060 Hb_172426_040--Hb_000020_060 Hb_000982_090 Hb_000982_090 Hb_172426_040--Hb_000982_090 Hb_004116_190 Hb_004116_190 Hb_172426_040--Hb_004116_190 Hb_025240_040--Hb_004218_110 Hb_004254_120 Hb_004254_120 Hb_025240_040--Hb_004254_120 Hb_025240_040--Hb_015934_070 Hb_127552_030 Hb_127552_030 Hb_025240_040--Hb_127552_030 Hb_002759_060 Hb_002759_060 Hb_025240_040--Hb_002759_060 Hb_000421_220 Hb_000421_220 Hb_025240_040--Hb_000421_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.437 7.73914 9.43434 15.1432 11.8812 20.9033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6325 23.481 20.9276 11.4 10.4008

CAGE analysis