Hb_003125_050

Information

Type -
Description -
Location Contig3125: 29539-32234
Sequence    

Annotation

kegg
ID vvi:100257575
description pentatricopeptide repeat-containing protein At5g50390, chloroplastic
nr
ID XP_012079839.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
swissprot
ID Q9FK33
description Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1
trembl
ID A0A067KF79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11296 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
2 Hb_000300_530 0.1116728275 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
3 Hb_000249_110 0.1377583296 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
4 Hb_023610_010 0.1404015779 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005657_010 0.1436316687 - - -
6 Hb_003906_120 0.1446065455 - - -
7 Hb_001767_010 0.1599584638 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
8 Hb_011609_190 0.160305072 - - 14-3-3 protein 2 [Hevea brasiliensis]
9 Hb_003001_030 0.1622193423 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
10 Hb_000789_190 0.1630469725 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
11 Hb_114684_020 0.1639208038 - - beta-1,3-glucanase [Hevea brasiliensis]
12 Hb_003906_110 0.1664070763 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
13 Hb_002983_020 0.166633266 - - PREDICTED: probable disease resistance protein At5g63020 [Populus euphratica]
14 Hb_012654_020 0.1684359489 - - conserved hypothetical protein [Ricinus communis]
15 Hb_014067_010 0.1684858392 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
16 Hb_004884_060 0.1685008862 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
17 Hb_002609_260 0.1685855099 - - CCCH-type zinc finger protein [Hevea brasiliensis]
18 Hb_000958_010 0.1693950355 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002422_060 0.169714311 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
20 Hb_000208_290 0.1714433627 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003125_050 Hb_003125_050 Hb_000300_530 Hb_000300_530 Hb_003125_050--Hb_000300_530 Hb_000249_110 Hb_000249_110 Hb_003125_050--Hb_000249_110 Hb_023610_010 Hb_023610_010 Hb_003125_050--Hb_023610_010 Hb_005657_010 Hb_005657_010 Hb_003125_050--Hb_005657_010 Hb_003906_120 Hb_003906_120 Hb_003125_050--Hb_003906_120 Hb_001767_010 Hb_001767_010 Hb_003125_050--Hb_001767_010 Hb_098315_110 Hb_098315_110 Hb_000300_530--Hb_098315_110 Hb_000300_530--Hb_023610_010 Hb_012654_020 Hb_012654_020 Hb_000300_530--Hb_012654_020 Hb_011021_030 Hb_011021_030 Hb_000300_530--Hb_011021_030 Hb_154381_050 Hb_154381_050 Hb_000300_530--Hb_154381_050 Hb_027751_020 Hb_027751_020 Hb_000249_110--Hb_027751_020 Hb_002843_160 Hb_002843_160 Hb_000249_110--Hb_002843_160 Hb_002609_260 Hb_002609_260 Hb_000249_110--Hb_002609_260 Hb_004884_060 Hb_004884_060 Hb_000249_110--Hb_004884_060 Hb_003001_030 Hb_003001_030 Hb_000249_110--Hb_003001_030 Hb_003906_110 Hb_003906_110 Hb_000249_110--Hb_003906_110 Hb_023610_010--Hb_004884_060 Hb_023610_010--Hb_098315_110 Hb_095397_010 Hb_095397_010 Hb_023610_010--Hb_095397_010 Hb_004156_060 Hb_004156_060 Hb_023610_010--Hb_004156_060 Hb_011174_070 Hb_011174_070 Hb_005657_010--Hb_011174_070 Hb_005657_010--Hb_001767_010 Hb_001001_160 Hb_001001_160 Hb_005657_010--Hb_001001_160 Hb_011609_190 Hb_011609_190 Hb_005657_010--Hb_011609_190 Hb_003747_240 Hb_003747_240 Hb_005657_010--Hb_003747_240 Hb_003906_120--Hb_003906_110 Hb_002232_180 Hb_002232_180 Hb_003906_120--Hb_002232_180 Hb_003906_120--Hb_095397_010 Hb_003906_120--Hb_002609_260 Hb_010931_100 Hb_010931_100 Hb_003906_120--Hb_010931_100 Hb_004545_150 Hb_004545_150 Hb_003906_120--Hb_004545_150 Hb_114684_020 Hb_114684_020 Hb_001767_010--Hb_114684_020 Hb_000427_030 Hb_000427_030 Hb_001767_010--Hb_000427_030 Hb_001767_010--Hb_011174_070 Hb_001767_010--Hb_003001_030 Hb_001767_010--Hb_000249_110 Hb_000380_180 Hb_000380_180 Hb_001767_010--Hb_000380_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.897854 0.112294 0 0 1.28412 0.715457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.333543 0.327957 0.91405 0.105146 0.0677849

CAGE analysis