Hb_003125_060

Information

Type -
Description -
Location Contig3125: 32688-35956
Sequence    

Annotation

kegg
ID rcu:RCOM_1506350
description hypothetical protein
nr
ID XP_012079838.1
description PREDICTED: snurportin-1 [Jatropha curcas]
swissprot
ID Q5ZI43
description Snurportin-1 OS=Gallus gallus GN=SNUPN PE=2 SV=1
trembl
ID A0A067KGF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11295 PE=4 SV=1
Gene Ontology
ID GO:0004484
description snurportin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33044: 32726-35914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_060 0.0 - - PREDICTED: snurportin-1 [Jatropha curcas]
2 Hb_002133_030 0.0706310406 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
3 Hb_000685_080 0.073222978 - - protein binding protein, putative [Ricinus communis]
4 Hb_027405_020 0.0812776143 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
5 Hb_000487_100 0.0835222966 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
6 Hb_023020_060 0.0842282374 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
7 Hb_007305_010 0.08765884 - - PREDICTED: girdin-like [Jatropha curcas]
8 Hb_001473_080 0.089163717 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
9 Hb_001975_020 0.0891914317 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
10 Hb_006002_030 0.0898675524 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
11 Hb_000016_280 0.0904781414 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
12 Hb_000116_280 0.0935782154 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
13 Hb_000152_890 0.09831506 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
14 Hb_001474_030 0.0986383814 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
15 Hb_001498_030 0.0989760849 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
16 Hb_005725_070 0.0993767927 - - conserved hypothetical protein [Ricinus communis]
17 Hb_033594_020 0.0998828539 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
18 Hb_000327_310 0.1009118431 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
19 Hb_006829_090 0.102527462 - - PREDICTED: protein MOS2 [Jatropha curcas]
20 Hb_000367_290 0.1039318884 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]

Gene co-expression network

sample Hb_003125_060 Hb_003125_060 Hb_002133_030 Hb_002133_030 Hb_003125_060--Hb_002133_030 Hb_000685_080 Hb_000685_080 Hb_003125_060--Hb_000685_080 Hb_027405_020 Hb_027405_020 Hb_003125_060--Hb_027405_020 Hb_000487_100 Hb_000487_100 Hb_003125_060--Hb_000487_100 Hb_023020_060 Hb_023020_060 Hb_003125_060--Hb_023020_060 Hb_007305_010 Hb_007305_010 Hb_003125_060--Hb_007305_010 Hb_002133_030--Hb_023020_060 Hb_001498_030 Hb_001498_030 Hb_002133_030--Hb_001498_030 Hb_004724_360 Hb_004724_360 Hb_002133_030--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_002133_030--Hb_000327_310 Hb_000343_210 Hb_000343_210 Hb_002133_030--Hb_000343_210 Hb_009646_050 Hb_009646_050 Hb_000685_080--Hb_009646_050 Hb_005399_020 Hb_005399_020 Hb_000685_080--Hb_005399_020 Hb_000016_280 Hb_000016_280 Hb_000685_080--Hb_000016_280 Hb_002977_010 Hb_002977_010 Hb_000685_080--Hb_002977_010 Hb_000685_080--Hb_002133_030 Hb_003020_110 Hb_003020_110 Hb_027405_020--Hb_003020_110 Hb_000310_080 Hb_000310_080 Hb_027405_020--Hb_000310_080 Hb_000029_160 Hb_000029_160 Hb_027405_020--Hb_000029_160 Hb_000172_550 Hb_000172_550 Hb_027405_020--Hb_000172_550 Hb_027405_020--Hb_023020_060 Hb_080147_030 Hb_080147_030 Hb_000487_100--Hb_080147_030 Hb_000487_100--Hb_000685_080 Hb_005725_020 Hb_005725_020 Hb_000487_100--Hb_005725_020 Hb_000740_070 Hb_000740_070 Hb_000487_100--Hb_000740_070 Hb_000487_100--Hb_005399_020 Hb_000640_020 Hb_000640_020 Hb_023020_060--Hb_000640_020 Hb_023020_060--Hb_000343_210 Hb_001396_290 Hb_001396_290 Hb_023020_060--Hb_001396_290 Hb_023020_060--Hb_003020_110 Hb_000504_160 Hb_000504_160 Hb_023020_060--Hb_000504_160 Hb_001226_180 Hb_001226_180 Hb_007305_010--Hb_001226_180 Hb_033594_020 Hb_033594_020 Hb_007305_010--Hb_033594_020 Hb_000236_280 Hb_000236_280 Hb_007305_010--Hb_000236_280 Hb_000025_750 Hb_000025_750 Hb_007305_010--Hb_000025_750 Hb_000104_080 Hb_000104_080 Hb_007305_010--Hb_000104_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.6653 44.1394 17.0736 15.3995 103.618 63.9358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.2255 15.5211 25.2555 20.1695 9.02011

CAGE analysis