Hb_003125_090

Information

Type -
Description -
Location Contig3125: 47108-47446
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_090 0.0 - - -
2 Hb_000207_160 0.0810430095 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
3 Hb_033363_030 0.1011740851 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
4 Hb_096224_050 0.102775609 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
5 Hb_004979_070 0.1053056773 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
6 Hb_007904_110 0.1062219978 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
7 Hb_004979_080 0.1084332531 - - kinase, putative [Ricinus communis]
8 Hb_025557_060 0.1118389279 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
9 Hb_000373_010 0.1122936722 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000116_530 0.1165772178 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 3; Short=HMG-CoA reductase 3 [Hevea brasiliensis]
11 Hb_000373_160 0.1182314143 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
12 Hb_119600_030 0.123091909 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
13 Hb_000608_290 0.1298746076 - - thioredoxin f-type, putative [Ricinus communis]
14 Hb_000644_010 0.1300521206 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
15 Hb_000027_110 0.1303298056 - - wall-associated kinase, putative [Ricinus communis]
16 Hb_005305_070 0.1312166953 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
17 Hb_002226_090 0.1317095269 - - Stachyose synthase precursor, putative [Ricinus communis]
18 Hb_000815_090 0.1344957604 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
19 Hb_000668_180 0.1360078343 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
20 Hb_000270_640 0.1371570138 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]

Gene co-expression network

sample Hb_003125_090 Hb_003125_090 Hb_000207_160 Hb_000207_160 Hb_003125_090--Hb_000207_160 Hb_033363_030 Hb_033363_030 Hb_003125_090--Hb_033363_030 Hb_096224_050 Hb_096224_050 Hb_003125_090--Hb_096224_050 Hb_004979_070 Hb_004979_070 Hb_003125_090--Hb_004979_070 Hb_007904_110 Hb_007904_110 Hb_003125_090--Hb_007904_110 Hb_004979_080 Hb_004979_080 Hb_003125_090--Hb_004979_080 Hb_015824_010 Hb_015824_010 Hb_000207_160--Hb_015824_010 Hb_000207_160--Hb_096224_050 Hb_000373_010 Hb_000373_010 Hb_000207_160--Hb_000373_010 Hb_005305_070 Hb_005305_070 Hb_000207_160--Hb_005305_070 Hb_000027_110 Hb_000027_110 Hb_000207_160--Hb_000027_110 Hb_033363_030--Hb_096224_050 Hb_033363_030--Hb_004979_080 Hb_033363_030--Hb_000027_110 Hb_000668_180 Hb_000668_180 Hb_033363_030--Hb_000668_180 Hb_046739_010 Hb_046739_010 Hb_033363_030--Hb_046739_010 Hb_011028_030 Hb_011028_030 Hb_033363_030--Hb_011028_030 Hb_096224_050--Hb_007904_110 Hb_096224_050--Hb_004979_070 Hb_000644_010 Hb_000644_010 Hb_096224_050--Hb_000644_010 Hb_096224_050--Hb_004979_080 Hb_096224_050--Hb_000027_110 Hb_004979_070--Hb_007904_110 Hb_004979_070--Hb_004979_080 Hb_025557_060 Hb_025557_060 Hb_004979_070--Hb_025557_060 Hb_119600_030 Hb_119600_030 Hb_004979_070--Hb_119600_030 Hb_004291_050 Hb_004291_050 Hb_004979_070--Hb_004291_050 Hb_007904_110--Hb_005305_070 Hb_007904_110--Hb_119600_030 Hb_007904_110--Hb_025557_060 Hb_007904_110--Hb_004979_080 Hb_004979_080--Hb_000644_010 Hb_004979_080--Hb_000668_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.45834 2.45582 1.81313 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.220376 0 0.197692 6.16479

CAGE analysis