Hb_003125_110

Information

Type -
Description -
Location Contig3125: 95117-95665
Sequence    

Annotation

kegg
ID rcu:RCOM_1506160
description nucleic acid binding protein, putative
nr
ID XP_012079829.1
description PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
swissprot
ID F4IPE3
description Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana GN=SGR5 PE=1 SV=1
trembl
ID A0A067K7B6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11289 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_110 0.0 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
2 Hb_080192_010 0.1122640366 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
3 Hb_005784_050 0.121239298 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_000030_230 0.1533898978 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
5 Hb_000011_250 0.1542182696 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
6 Hb_000646_040 0.1566938969 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
7 Hb_001216_060 0.1578623958 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000307_060 0.1641162367 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
9 Hb_001688_030 0.164407936 - - hypothetical protein JCGZ_10716 [Jatropha curcas]
10 Hb_001417_090 0.1672387361 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]
11 Hb_005542_070 0.167926489 - - hypothetical protein ZEAMMB73_851878 [Zea mays]
12 Hb_007919_010 0.1746008019 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000120_560 0.1759708377 - - protein with unknown function [Ricinus communis]
14 Hb_012395_250 0.176190327 - - hypothetical protein RCOM_1217340 [Ricinus communis]
15 Hb_001936_120 0.1774576071 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
16 Hb_003582_030 0.17840422 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
17 Hb_008021_050 0.1793148883 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_029791_010 0.1817260048 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
19 Hb_000928_200 0.1830040995 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
20 Hb_021596_050 0.1830936304 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003125_110 Hb_003125_110 Hb_080192_010 Hb_080192_010 Hb_003125_110--Hb_080192_010 Hb_005784_050 Hb_005784_050 Hb_003125_110--Hb_005784_050 Hb_000030_230 Hb_000030_230 Hb_003125_110--Hb_000030_230 Hb_000011_250 Hb_000011_250 Hb_003125_110--Hb_000011_250 Hb_000646_040 Hb_000646_040 Hb_003125_110--Hb_000646_040 Hb_001216_060 Hb_001216_060 Hb_003125_110--Hb_001216_060 Hb_080192_010--Hb_005784_050 Hb_005914_120 Hb_005914_120 Hb_080192_010--Hb_005914_120 Hb_000161_140 Hb_000161_140 Hb_080192_010--Hb_000161_140 Hb_005542_070 Hb_005542_070 Hb_080192_010--Hb_005542_070 Hb_000963_210 Hb_000963_210 Hb_080192_010--Hb_000963_210 Hb_002053_020 Hb_002053_020 Hb_005784_050--Hb_002053_020 Hb_000175_370 Hb_000175_370 Hb_005784_050--Hb_000175_370 Hb_025194_070 Hb_025194_070 Hb_005784_050--Hb_025194_070 Hb_000120_560 Hb_000120_560 Hb_005784_050--Hb_000120_560 Hb_005784_050--Hb_000646_040 Hb_000307_060 Hb_000307_060 Hb_000030_230--Hb_000307_060 Hb_003582_030 Hb_003582_030 Hb_000030_230--Hb_003582_030 Hb_000317_170 Hb_000317_170 Hb_000030_230--Hb_000317_170 Hb_000087_190 Hb_000087_190 Hb_000030_230--Hb_000087_190 Hb_000000_260 Hb_000000_260 Hb_000030_230--Hb_000000_260 Hb_002186_110 Hb_002186_110 Hb_000030_230--Hb_002186_110 Hb_000011_250--Hb_001216_060 Hb_000011_250--Hb_025194_070 Hb_003893_180 Hb_003893_180 Hb_000011_250--Hb_003893_180 Hb_000497_080 Hb_000497_080 Hb_000011_250--Hb_000497_080 Hb_000011_250--Hb_005784_050 Hb_000646_040--Hb_000120_560 Hb_000646_040--Hb_003582_030 Hb_002534_070 Hb_002534_070 Hb_000646_040--Hb_002534_070 Hb_007919_010 Hb_007919_010 Hb_000646_040--Hb_007919_010 Hb_002186_170 Hb_002186_170 Hb_000646_040--Hb_002186_170 Hb_000422_060 Hb_000422_060 Hb_000646_040--Hb_000422_060 Hb_013399_060 Hb_013399_060 Hb_001216_060--Hb_013399_060 Hb_003598_050 Hb_003598_050 Hb_001216_060--Hb_003598_050 Hb_000645_080 Hb_000645_080 Hb_001216_060--Hb_000645_080 Hb_009421_060 Hb_009421_060 Hb_001216_060--Hb_009421_060 Hb_012395_250 Hb_012395_250 Hb_001216_060--Hb_012395_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.61167 7.50462 43.4409 0 0.0443396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 3.81458 0 1.12397 8.82673

CAGE analysis