Hb_003125_150

Information

Type -
Description -
Location Contig3125: 112753-115218
Sequence    

Annotation

kegg
ID rcu:RCOM_1505970
description sec61 gamma subunit, putative
nr
ID XP_012090693.1
description PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
swissprot
ID P0DI75
description Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana GN=SEC61G2 PE=1 SV=1
trembl
ID D6BQN8
description Protein transport protein SEC61 subunit gamma OS=Jatropha curcas GN=JCGZ_26443 PE=2 SV=1
Gene Ontology
ID GO:0005886
description protein transport protein sec61 subunit gamma-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33055: 113936-115230 , PASA_asmbl_33056: 113936-115221 , PASA_asmbl_33057: 112827-115201 , PASA_asmbl_33058: 116128-122110
cDNA
(Sanger)
(ID:Location)		 007_P12.ab1: 114402-115221 , 012_M20.ab1: 114402-115221 , 017_O22.ab1: 114455-115140 , 024_B16.ab1: 114578-115114 , 029_C05.ab1: 115055-115181 , 044_N09.ab1: 114576-115230

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_150 0.0 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
2 Hb_001269_270 0.048304005 - - 60S ribosomal protein L27B [Hevea brasiliensis]
3 Hb_001045_080 0.0503915213 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
4 Hb_000312_090 0.0646310305 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
5 Hb_009851_100 0.0723663817 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
6 Hb_007479_020 0.0727081281 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
7 Hb_000120_750 0.0752459145 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
8 Hb_000617_090 0.0757981459 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
9 Hb_002571_020 0.0781242563 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
10 Hb_002431_050 0.0792229118 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
11 Hb_000099_060 0.080068663 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
12 Hb_010672_060 0.0805535659 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
13 Hb_001638_260 0.0815202716 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
14 Hb_008173_090 0.0832347836 - - glutathione peroxidase, putative [Ricinus communis]
15 Hb_001268_140 0.0835387696 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003226_210 0.0873693088 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
17 Hb_000526_150 0.0876122983 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
18 Hb_002234_070 0.0897873618 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
19 Hb_000283_110 0.0911013111 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
20 Hb_001687_040 0.0913812695 - - actin-depolymerizing factor [Hevea brasiliensis]

Gene co-expression network

sample Hb_003125_150 Hb_003125_150 Hb_001269_270 Hb_001269_270 Hb_003125_150--Hb_001269_270 Hb_001045_080 Hb_001045_080 Hb_003125_150--Hb_001045_080 Hb_000312_090 Hb_000312_090 Hb_003125_150--Hb_000312_090 Hb_009851_100 Hb_009851_100 Hb_003125_150--Hb_009851_100 Hb_007479_020 Hb_007479_020 Hb_003125_150--Hb_007479_020 Hb_000120_750 Hb_000120_750 Hb_003125_150--Hb_000120_750 Hb_001638_260 Hb_001638_260 Hb_001269_270--Hb_001638_260 Hb_000617_090 Hb_000617_090 Hb_001269_270--Hb_000617_090 Hb_001269_270--Hb_001045_080 Hb_000526_150 Hb_000526_150 Hb_001269_270--Hb_000526_150 Hb_001269_270--Hb_009851_100 Hb_001045_080--Hb_009851_100 Hb_001268_140 Hb_001268_140 Hb_001045_080--Hb_001268_140 Hb_001045_080--Hb_000312_090 Hb_000046_260 Hb_000046_260 Hb_001045_080--Hb_000046_260 Hb_000312_090--Hb_000617_090 Hb_001221_310 Hb_001221_310 Hb_000312_090--Hb_001221_310 Hb_000312_090--Hb_009851_100 Hb_002835_320 Hb_002835_320 Hb_000312_090--Hb_002835_320 Hb_002571_020 Hb_002571_020 Hb_009851_100--Hb_002571_020 Hb_009851_100--Hb_002835_320 Hb_009851_100--Hb_000526_150 Hb_001722_100 Hb_001722_100 Hb_007479_020--Hb_001722_100 Hb_000671_090 Hb_000671_090 Hb_007479_020--Hb_000671_090 Hb_001383_060 Hb_001383_060 Hb_007479_020--Hb_001383_060 Hb_001433_050 Hb_001433_050 Hb_007479_020--Hb_001433_050 Hb_007479_020--Hb_000120_750 Hb_008173_090 Hb_008173_090 Hb_007479_020--Hb_008173_090 Hb_004108_230 Hb_004108_230 Hb_000120_750--Hb_004108_230 Hb_004837_140 Hb_004837_140 Hb_000120_750--Hb_004837_140 Hb_000120_750--Hb_001383_060 Hb_000317_340 Hb_000317_340 Hb_000120_750--Hb_000317_340 Hb_004204_120 Hb_004204_120 Hb_000120_750--Hb_004204_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
174.684 49.4604 63.6293 107.04 99.0938 126.146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
335.869 416.871 176.854 84.6974 35.8724

CAGE analysis