Hb_003125_160

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig3125: 116148-122364
Sequence    

Annotation

kegg
ID csv:101213576
description nuclear transcription factor Y subunit C-1-like
nr
ID XP_012090689.1
description PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
swissprot
ID Q9SMP0
description Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1
trembl
ID A0A067JFC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26442 PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit c-1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33058: 116128-122110 , PASA_asmbl_33061: 120676-120775
cDNA
(Sanger)
(ID:Location)		 024_L14.ab1: 122112-122360

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_160 0.0 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
2 Hb_000230_560 0.0591155991 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
3 Hb_156973_010 0.0605446525 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003665_060 0.0617781066 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
5 Hb_004182_040 0.0651639624 - - PREDICTED: J domain-containing protein spf31 [Jatropha curcas]
6 Hb_002918_030 0.0683680455 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
7 Hb_001369_180 0.0695520784 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
8 Hb_003030_070 0.0716644554 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
9 Hb_007632_030 0.0717492263 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
10 Hb_003025_110 0.074903651 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
11 Hb_054865_120 0.0753475778 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
12 Hb_009545_080 0.0771821505 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
13 Hb_001936_060 0.0779192478 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
14 Hb_001444_010 0.0784307728 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
15 Hb_000054_090 0.0784942931 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000367_130 0.0788133137 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000883_020 0.0807765135 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
18 Hb_006620_020 0.0809429247 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
19 Hb_002728_070 0.081125139 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
20 Hb_000025_470 0.0811894737 - - PREDICTED: signal peptide peptidase [Jatropha curcas]

Gene co-expression network

sample Hb_003125_160 Hb_003125_160 Hb_000230_560 Hb_000230_560 Hb_003125_160--Hb_000230_560 Hb_156973_010 Hb_156973_010 Hb_003125_160--Hb_156973_010 Hb_003665_060 Hb_003665_060 Hb_003125_160--Hb_003665_060 Hb_004182_040 Hb_004182_040 Hb_003125_160--Hb_004182_040 Hb_002918_030 Hb_002918_030 Hb_003125_160--Hb_002918_030 Hb_001369_180 Hb_001369_180 Hb_003125_160--Hb_001369_180 Hb_002997_080 Hb_002997_080 Hb_000230_560--Hb_002997_080 Hb_000230_560--Hb_003665_060 Hb_000141_250 Hb_000141_250 Hb_000230_560--Hb_000141_250 Hb_003030_070 Hb_003030_070 Hb_000230_560--Hb_003030_070 Hb_007075_040 Hb_007075_040 Hb_000230_560--Hb_007075_040 Hb_000883_020 Hb_000883_020 Hb_000230_560--Hb_000883_020 Hb_023386_020 Hb_023386_020 Hb_156973_010--Hb_023386_020 Hb_002175_030 Hb_002175_030 Hb_156973_010--Hb_002175_030 Hb_001258_090 Hb_001258_090 Hb_156973_010--Hb_001258_090 Hb_000853_230 Hb_000853_230 Hb_156973_010--Hb_000853_230 Hb_000403_050 Hb_000403_050 Hb_156973_010--Hb_000403_050 Hb_000010_330 Hb_000010_330 Hb_003665_060--Hb_000010_330 Hb_003964_070 Hb_003964_070 Hb_003665_060--Hb_003964_070 Hb_007317_110 Hb_007317_110 Hb_003665_060--Hb_007317_110 Hb_003665_060--Hb_003030_070 Hb_000085_160 Hb_000085_160 Hb_003665_060--Hb_000085_160 Hb_000690_130 Hb_000690_130 Hb_004182_040--Hb_000690_130 Hb_004182_040--Hb_003665_060 Hb_003728_080 Hb_003728_080 Hb_004182_040--Hb_003728_080 Hb_001350_010 Hb_001350_010 Hb_004182_040--Hb_001350_010 Hb_000291_220 Hb_000291_220 Hb_004182_040--Hb_000291_220 Hb_006120_070 Hb_006120_070 Hb_002918_030--Hb_006120_070 Hb_000174_110 Hb_000174_110 Hb_002918_030--Hb_000174_110 Hb_000260_100 Hb_000260_100 Hb_002918_030--Hb_000260_100 Hb_006620_020 Hb_006620_020 Hb_002918_030--Hb_006620_020 Hb_002918_030--Hb_000230_560 Hb_001369_180--Hb_003030_070 Hb_007218_080 Hb_007218_080 Hb_001369_180--Hb_007218_080 Hb_001369_180--Hb_000230_560 Hb_002495_040 Hb_002495_040 Hb_001369_180--Hb_002495_040 Hb_007336_020 Hb_007336_020 Hb_001369_180--Hb_007336_020 Hb_004310_130 Hb_004310_130 Hb_001369_180--Hb_004310_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.3566 10.2468 19.7756 18.5875 29.7861 34.059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1511 26.301 16.8525 19.797 20.2457

CAGE analysis