Hb_003125_180

Information

Type -
Description -
Location Contig3125: 130374-134547
Sequence    

Annotation

kegg
ID rcu:RCOM_1505840
description hypothetical protein
nr
ID KDP22609.1
description hypothetical protein JCGZ_26440 [Jatropha curcas]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID A0A067JSV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33069: 134087-134237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_180 0.0 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
2 Hb_011032_010 0.0709570318 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
3 Hb_169051_010 0.0776969252 - - JHL06B08.1 [Jatropha curcas]
4 Hb_000019_170 0.077885294 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
5 Hb_029879_120 0.0785081353 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000674_010 0.0812959936 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
7 Hb_003058_200 0.0904973632 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
8 Hb_053575_020 0.0918006297 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
9 Hb_000684_360 0.0919039332 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
10 Hb_000157_070 0.0951908556 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
11 Hb_002851_010 0.0976732714 - - sugar transporter, putative [Ricinus communis]
12 Hb_001702_050 0.0992227468 - - PREDICTED: probable protein S-acyltransferase 19 isoform X1 [Jatropha curcas]
13 Hb_020805_180 0.0997171179 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
14 Hb_005000_090 0.1019026394 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
15 Hb_002072_010 0.1092166039 - - conserved hypothetical protein [Ricinus communis]
16 Hb_135959_010 0.110516684 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
17 Hb_000000_120 0.1105750979 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
18 Hb_000321_090 0.1110334412 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
19 Hb_021297_020 0.1122273842 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
20 Hb_001366_270 0.1123796422 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]

Gene co-expression network

sample Hb_003125_180 Hb_003125_180 Hb_011032_010 Hb_011032_010 Hb_003125_180--Hb_011032_010 Hb_169051_010 Hb_169051_010 Hb_003125_180--Hb_169051_010 Hb_000019_170 Hb_000019_170 Hb_003125_180--Hb_000019_170 Hb_029879_120 Hb_029879_120 Hb_003125_180--Hb_029879_120 Hb_000674_010 Hb_000674_010 Hb_003125_180--Hb_000674_010 Hb_003058_200 Hb_003058_200 Hb_003125_180--Hb_003058_200 Hb_053575_020 Hb_053575_020 Hb_011032_010--Hb_053575_020 Hb_011032_010--Hb_169051_010 Hb_011032_010--Hb_003058_200 Hb_011032_010--Hb_000674_010 Hb_002851_010 Hb_002851_010 Hb_011032_010--Hb_002851_010 Hb_000684_360 Hb_000684_360 Hb_169051_010--Hb_000684_360 Hb_146510_010 Hb_146510_010 Hb_169051_010--Hb_146510_010 Hb_001322_180 Hb_001322_180 Hb_169051_010--Hb_001322_180 Hb_169051_010--Hb_053575_020 Hb_000019_170--Hb_003058_200 Hb_002072_010 Hb_002072_010 Hb_000019_170--Hb_002072_010 Hb_102763_010 Hb_102763_010 Hb_000019_170--Hb_102763_010 Hb_000823_010 Hb_000823_010 Hb_000019_170--Hb_000823_010 Hb_000157_070 Hb_000157_070 Hb_000019_170--Hb_000157_070 Hb_001702_050 Hb_001702_050 Hb_029879_120--Hb_001702_050 Hb_000019_010 Hb_000019_010 Hb_029879_120--Hb_000019_010 Hb_011174_080 Hb_011174_080 Hb_029879_120--Hb_011174_080 Hb_001235_130 Hb_001235_130 Hb_029879_120--Hb_001235_130 Hb_029879_120--Hb_000157_070 Hb_000674_010--Hb_003058_200 Hb_000674_010--Hb_002072_010 Hb_021297_020 Hb_021297_020 Hb_000674_010--Hb_021297_020 Hb_000674_010--Hb_002851_010 Hb_005000_090 Hb_005000_090 Hb_000674_010--Hb_005000_090 Hb_003058_200--Hb_002072_010 Hb_003058_200--Hb_021297_020 Hb_003058_200--Hb_002851_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74586 6.19589 3.06419 7.61111 2.38383 2.30334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79374 1.04323 0.992428 9.52874 7.74451

CAGE analysis