Hb_003125_190

Information

Type -
Description -
Location Contig3125: 137887-139069
Sequence    

Annotation

kegg
ID pop:POPTR_0015s10960g
description POPTRDRAFT_575370; hypothetical protein
nr
ID XP_002322266.2
description hypothetical protein POPTR_0015s10960g [Populus trichocarpa]
swissprot
ID Q9SW33
description Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4g24930 PE=1 SV=1
trembl
ID B9IFC9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s10960g PE=4 SV=2
Gene Ontology
ID GO:0031977
description thylakoid lumenal kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33070: 137804-139085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_190 0.0 - - hypothetical protein POPTR_0015s10960g [Populus trichocarpa]
2 Hb_003607_050 0.0662070217 - - PREDICTED: uncharacterized protein LOC105644428 [Jatropha curcas]
3 Hb_003683_110 0.0867813608 - - JHL10I11.3 [Jatropha curcas]
4 Hb_000887_020 0.0878043555 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
5 Hb_010106_010 0.0879342565 - - PREDICTED: cucumisin-like [Populus euphratica]
6 Hb_139518_030 0.0883544298 - - protein kinase atn1, putative [Ricinus communis]
7 Hb_000996_140 0.0925482292 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
8 Hb_002768_030 0.0986967692 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
9 Hb_001476_080 0.0999749237 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
10 Hb_009711_020 0.1000428647 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
11 Hb_029584_060 0.1050148684 - - Grave disease carrier protein, putative [Ricinus communis]
12 Hb_004934_110 0.1056636358 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
13 Hb_003018_010 0.1061976691 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
14 Hb_001016_030 0.1064438155 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
15 Hb_004871_040 0.1079250931 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
16 Hb_000529_030 0.1082398844 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001157_020 0.1099422544 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
18 Hb_006831_130 0.1103460423 - - catalytic, putative [Ricinus communis]
19 Hb_019249_010 0.1112815396 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
20 Hb_033594_110 0.1120072396 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003125_190 Hb_003125_190 Hb_003607_050 Hb_003607_050 Hb_003125_190--Hb_003607_050 Hb_003683_110 Hb_003683_110 Hb_003125_190--Hb_003683_110 Hb_000887_020 Hb_000887_020 Hb_003125_190--Hb_000887_020 Hb_010106_010 Hb_010106_010 Hb_003125_190--Hb_010106_010 Hb_139518_030 Hb_139518_030 Hb_003125_190--Hb_139518_030 Hb_000996_140 Hb_000996_140 Hb_003125_190--Hb_000996_140 Hb_004934_110 Hb_004934_110 Hb_003607_050--Hb_004934_110 Hb_003607_050--Hb_010106_010 Hb_003607_050--Hb_000887_020 Hb_003607_050--Hb_139518_030 Hb_003749_010 Hb_003749_010 Hb_003607_050--Hb_003749_010 Hb_002768_030 Hb_002768_030 Hb_003683_110--Hb_002768_030 Hb_001780_040 Hb_001780_040 Hb_003683_110--Hb_001780_040 Hb_012573_070 Hb_012573_070 Hb_003683_110--Hb_012573_070 Hb_000453_090 Hb_000453_090 Hb_003683_110--Hb_000453_090 Hb_003226_100 Hb_003226_100 Hb_003683_110--Hb_003226_100 Hb_007416_030 Hb_007416_030 Hb_003683_110--Hb_007416_030 Hb_024682_010 Hb_024682_010 Hb_000887_020--Hb_024682_010 Hb_000251_070 Hb_000251_070 Hb_000887_020--Hb_000251_070 Hb_000887_020--Hb_004934_110 Hb_004204_120 Hb_004204_120 Hb_000887_020--Hb_004204_120 Hb_000633_020 Hb_000633_020 Hb_010106_010--Hb_000633_020 Hb_000529_030 Hb_000529_030 Hb_010106_010--Hb_000529_030 Hb_010222_020 Hb_010222_020 Hb_010106_010--Hb_010222_020 Hb_010106_010--Hb_002768_030 Hb_001504_110 Hb_001504_110 Hb_139518_030--Hb_001504_110 Hb_001105_030 Hb_001105_030 Hb_139518_030--Hb_001105_030 Hb_001195_280 Hb_001195_280 Hb_139518_030--Hb_001195_280 Hb_153112_020 Hb_153112_020 Hb_139518_030--Hb_153112_020 Hb_007441_330 Hb_007441_330 Hb_000996_140--Hb_007441_330 Hb_026053_020 Hb_026053_020 Hb_000996_140--Hb_026053_020 Hb_010175_040 Hb_010175_040 Hb_000996_140--Hb_010175_040 Hb_000996_140--Hb_003226_100 Hb_000996_140--Hb_002768_030 Hb_003018_010 Hb_003018_010 Hb_000996_140--Hb_003018_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5515 9.93246 22.0988 13.9405 16.0995 23.8307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.7387 52.0918 18.2689 6.82948 18.8978

CAGE analysis