Hb_003125_210

Information

Type -
Description -
Location Contig3125: 143927-145686
Sequence    

Annotation

kegg
ID rcu:RCOM_1505800
description Phospholipase C 4 precursor, putative (EC:3.1.4.3)
nr
ID XP_002511167.1
description Phospholipase C 4 precursor, putative [Ricinus communis]
swissprot
ID Q8H965
description Non-specific phospholipase C6 OS=Arabidopsis thaliana GN=NPC6 PE=2 SV=1
trembl
ID B9RAE2
description Phospholipase C 4, putative OS=Ricinus communis GN=RCOM_1505800 PE=4 SV=1
Gene Ontology
ID GO:0034480
description non-specific phospholipase c6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33076: 144384-144718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_210 0.0 - - Phospholipase C 4 precursor, putative [Ricinus communis]
2 Hb_009113_080 0.1027588532 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
3 Hb_004696_010 0.1032675163 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
4 Hb_002815_020 0.1039646853 transcription factor TF Family: G2-like Homeodomain-like superfamily protein isoform 2 [Theobroma cacao]
5 Hb_003086_030 0.1048004591 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
6 Hb_001951_080 0.1057904998 - - O-acetyltransferase, putative [Ricinus communis]
7 Hb_010222_040 0.1108698206 - - PREDICTED: kinesin-2 [Jatropha curcas]
8 Hb_000003_580 0.1119242211 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001318_100 0.1128773327 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
10 Hb_001268_150 0.1129370848 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_002073_170 0.1163393737 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
12 Hb_001159_230 0.1168757488 - - Kinesin heavy chain, putative [Ricinus communis]
13 Hb_000160_250 0.1218882793 - - Uncharacterized protein TCM_019235 [Theobroma cacao]
14 Hb_000417_050 0.1246562583 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
15 Hb_003054_070 0.1256382582 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
16 Hb_000417_210 0.1259370679 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000429_160 0.1259373068 - - PREDICTED: uncharacterized protein LOC105645177 [Jatropha curcas]
18 Hb_012484_050 0.1265548433 - - PREDICTED: kinesin KP1 [Jatropha curcas]
19 Hb_000617_330 0.1270667179 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
20 Hb_000290_030 0.1281568832 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003125_210 Hb_003125_210 Hb_009113_080 Hb_009113_080 Hb_003125_210--Hb_009113_080 Hb_004696_010 Hb_004696_010 Hb_003125_210--Hb_004696_010 Hb_002815_020 Hb_002815_020 Hb_003125_210--Hb_002815_020 Hb_003086_030 Hb_003086_030 Hb_003125_210--Hb_003086_030 Hb_001951_080 Hb_001951_080 Hb_003125_210--Hb_001951_080 Hb_010222_040 Hb_010222_040 Hb_003125_210--Hb_010222_040 Hb_001946_200 Hb_001946_200 Hb_009113_080--Hb_001946_200 Hb_001085_190 Hb_001085_190 Hb_009113_080--Hb_001085_190 Hb_000977_030 Hb_000977_030 Hb_009113_080--Hb_000977_030 Hb_000005_360 Hb_000005_360 Hb_009113_080--Hb_000005_360 Hb_001318_100 Hb_001318_100 Hb_009113_080--Hb_001318_100 Hb_011918_070 Hb_011918_070 Hb_004696_010--Hb_011918_070 Hb_003580_050 Hb_003580_050 Hb_004696_010--Hb_003580_050 Hb_028008_040 Hb_028008_040 Hb_004696_010--Hb_028008_040 Hb_003835_080 Hb_003835_080 Hb_004696_010--Hb_003835_080 Hb_001541_130 Hb_001541_130 Hb_004696_010--Hb_001541_130 Hb_001159_230 Hb_001159_230 Hb_004696_010--Hb_001159_230 Hb_002815_020--Hb_001159_230 Hb_000544_190 Hb_000544_190 Hb_002815_020--Hb_000544_190 Hb_006002_050 Hb_006002_050 Hb_002815_020--Hb_006002_050 Hb_002815_020--Hb_004696_010 Hb_012395_110 Hb_012395_110 Hb_002815_020--Hb_012395_110 Hb_000003_580 Hb_000003_580 Hb_003086_030--Hb_000003_580 Hb_002894_080 Hb_002894_080 Hb_003086_030--Hb_002894_080 Hb_000030_130 Hb_000030_130 Hb_003086_030--Hb_000030_130 Hb_019516_060 Hb_019516_060 Hb_003086_030--Hb_019516_060 Hb_000457_120 Hb_000457_120 Hb_003086_030--Hb_000457_120 Hb_012484_050 Hb_012484_050 Hb_001951_080--Hb_012484_050 Hb_005784_010 Hb_005784_010 Hb_001951_080--Hb_005784_010 Hb_000345_550 Hb_000345_550 Hb_001951_080--Hb_000345_550 Hb_001486_280 Hb_001486_280 Hb_001951_080--Hb_001486_280 Hb_003097_160 Hb_003097_160 Hb_001951_080--Hb_003097_160 Hb_000856_200 Hb_000856_200 Hb_010222_040--Hb_000856_200 Hb_010557_020 Hb_010557_020 Hb_010222_040--Hb_010557_020 Hb_000290_030 Hb_000290_030 Hb_010222_040--Hb_000290_030 Hb_144449_010 Hb_144449_010 Hb_010222_040--Hb_144449_010 Hb_010222_040--Hb_001318_100 Hb_000333_030 Hb_000333_030 Hb_010222_040--Hb_000333_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.173081 2.2859 5.21365 11.9515 0.114203 0.161777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0303894 0.143451 0.314716 1.29747 7.0594

CAGE analysis