Hb_003126_050

Information

Type -
Description -
Location Contig3126: 25092-30106
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11310g
description hypothetical protein
nr
ID XP_012088508.1
description PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
swissprot
ID Q9MBA3
description Cell cycle checkpoint protein RAD17 OS=Arabidopsis thaliana GN=RAD17 PE=2 SV=1
trembl
ID A0A067JWS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25387 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cell cycle checkpoint protein rad17 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33086: 25042-26280 , PASA_asmbl_33087: 25463-25756 , PASA_asmbl_33088: 26916-27531 , PASA_asmbl_33089: 27957-29304 , PASA_asmbl_33090: 27988-28139 , PASA_asmbl_33091: 29630-30210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003126_050 0.0 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
2 Hb_003417_020 0.0429139504 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
3 Hb_000640_240 0.0606695045 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
4 Hb_003092_040 0.0611385116 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
5 Hb_000041_270 0.0640378852 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
6 Hb_096563_010 0.064598997 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
7 Hb_007691_030 0.0655425293 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
8 Hb_002043_190 0.0660168667 - - rwd domain-containing protein, putative [Ricinus communis]
9 Hb_024071_020 0.0669529306 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
10 Hb_003428_030 0.0679654685 - - tRNA, putative [Ricinus communis]
11 Hb_011344_210 0.071107374 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
12 Hb_009557_070 0.0713858424 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000757_060 0.0725086975 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
14 Hb_000085_160 0.0725490757 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
15 Hb_005357_080 0.073534696 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
16 Hb_025645_010 0.0744198516 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
17 Hb_003525_010 0.0745560834 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
18 Hb_002660_080 0.0746173974 - - 60S ribosomal protein L12A [Hevea brasiliensis]
19 Hb_004800_230 0.0746902827 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
20 Hb_000580_180 0.0752050047 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003126_050 Hb_003126_050 Hb_003417_020 Hb_003417_020 Hb_003126_050--Hb_003417_020 Hb_000640_240 Hb_000640_240 Hb_003126_050--Hb_000640_240 Hb_003092_040 Hb_003092_040 Hb_003126_050--Hb_003092_040 Hb_000041_270 Hb_000041_270 Hb_003126_050--Hb_000041_270 Hb_096563_010 Hb_096563_010 Hb_003126_050--Hb_096563_010 Hb_007691_030 Hb_007691_030 Hb_003126_050--Hb_007691_030 Hb_001305_010 Hb_001305_010 Hb_003417_020--Hb_001305_010 Hb_003417_020--Hb_007691_030 Hb_003175_010 Hb_003175_010 Hb_003417_020--Hb_003175_010 Hb_019280_040 Hb_019280_040 Hb_003417_020--Hb_019280_040 Hb_007951_060 Hb_007951_060 Hb_003417_020--Hb_007951_060 Hb_001358_030 Hb_001358_030 Hb_000640_240--Hb_001358_030 Hb_066182_010 Hb_066182_010 Hb_000640_240--Hb_066182_010 Hb_000640_240--Hb_096563_010 Hb_011970_030 Hb_011970_030 Hb_000640_240--Hb_011970_030 Hb_000640_240--Hb_003417_020 Hb_007416_280 Hb_007416_280 Hb_003092_040--Hb_007416_280 Hb_005663_060 Hb_005663_060 Hb_003092_040--Hb_005663_060 Hb_000510_130 Hb_000510_130 Hb_003092_040--Hb_000510_130 Hb_003092_040--Hb_007691_030 Hb_032202_190 Hb_032202_190 Hb_003092_040--Hb_032202_190 Hb_000210_180 Hb_000210_180 Hb_000041_270--Hb_000210_180 Hb_000041_270--Hb_096563_010 Hb_000757_060 Hb_000757_060 Hb_000041_270--Hb_000757_060 Hb_001481_090 Hb_001481_090 Hb_000041_270--Hb_001481_090 Hb_004491_010 Hb_004491_010 Hb_000041_270--Hb_004491_010 Hb_000661_250 Hb_000661_250 Hb_096563_010--Hb_000661_250 Hb_003010_030 Hb_003010_030 Hb_096563_010--Hb_003010_030 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_001259_090 Hb_001259_090 Hb_096563_010--Hb_001259_090 Hb_000059_330 Hb_000059_330 Hb_096563_010--Hb_000059_330 Hb_096563_010--Hb_000210_180 Hb_003428_030 Hb_003428_030 Hb_007691_030--Hb_003428_030 Hb_005144_160 Hb_005144_160 Hb_007691_030--Hb_005144_160 Hb_002739_100 Hb_002739_100 Hb_007691_030--Hb_002739_100 Hb_000876_070 Hb_000876_070 Hb_007691_030--Hb_000876_070 Hb_000580_180 Hb_000580_180 Hb_007691_030--Hb_000580_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.90129 4.43126 5.05667 6.43116 8.20971 8.80355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.28535 11.4504 7.46456 6.84739 2.95662

CAGE analysis