Hb_003126_070

Information

Type -
Description -
Location Contig3126: 34623-37897
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11300g
description hypothetical protein
nr
ID XP_012088505.1
description PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
swissprot
ID U3KRF2
description 3-dehydroquinate synthase, chloroplastic OS=Actinidia chinensis GN=DHQS PE=1 SV=2
trembl
ID A0A067JJD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25385 PE=3 SV=1
Gene Ontology
ID GO:0005737
description 3-dehydroquinate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33093: 34730-36915 , PASA_asmbl_33094: 34730-37744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003126_070 0.0 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
2 Hb_076233_040 0.075285263 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
3 Hb_002284_230 0.0888429485 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
4 Hb_003291_020 0.0910313548 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
5 Hb_000300_430 0.0912258446 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
6 Hb_008232_010 0.0921377676 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
7 Hb_001123_160 0.0922064284 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_001353_010 0.0934276101 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
9 Hb_000700_040 0.0938394845 - - UDP-Glycosyltransferase superfamily protein isoform 4 [Theobroma cacao]
10 Hb_148209_010 0.0949354447 - - RAS-related GTP-binding family protein [Populus trichocarpa]
11 Hb_011344_190 0.0958683786 - - PREDICTED: maspardin [Jatropha curcas]
12 Hb_000982_080 0.1001158501 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
13 Hb_004672_010 0.1017871618 - - ecotropic viral integration site, putative [Ricinus communis]
14 Hb_000046_350 0.1032619711 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003622_040 0.1046252314 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
16 Hb_001307_030 0.1048673405 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
17 Hb_010560_050 0.1048875232 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
18 Hb_001222_080 0.1062987561 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
19 Hb_000336_240 0.1072308656 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
20 Hb_006420_080 0.1072774327 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003126_070 Hb_003126_070 Hb_076233_040 Hb_076233_040 Hb_003126_070--Hb_076233_040 Hb_002284_230 Hb_002284_230 Hb_003126_070--Hb_002284_230 Hb_003291_020 Hb_003291_020 Hb_003126_070--Hb_003291_020 Hb_000300_430 Hb_000300_430 Hb_003126_070--Hb_000300_430 Hb_008232_010 Hb_008232_010 Hb_003126_070--Hb_008232_010 Hb_001123_160 Hb_001123_160 Hb_003126_070--Hb_001123_160 Hb_008841_020 Hb_008841_020 Hb_076233_040--Hb_008841_020 Hb_000329_210 Hb_000329_210 Hb_076233_040--Hb_000329_210 Hb_010883_050 Hb_010883_050 Hb_076233_040--Hb_010883_050 Hb_006420_080 Hb_006420_080 Hb_076233_040--Hb_006420_080 Hb_005054_210 Hb_005054_210 Hb_076233_040--Hb_005054_210 Hb_003697_050 Hb_003697_050 Hb_002284_230--Hb_003697_050 Hb_019654_030 Hb_019654_030 Hb_002284_230--Hb_019654_030 Hb_000046_350 Hb_000046_350 Hb_002284_230--Hb_000046_350 Hb_025098_010 Hb_025098_010 Hb_002284_230--Hb_025098_010 Hb_003633_050 Hb_003633_050 Hb_002284_230--Hb_003633_050 Hb_148209_010 Hb_148209_010 Hb_003291_020--Hb_148209_010 Hb_003291_020--Hb_001123_160 Hb_000056_250 Hb_000056_250 Hb_003291_020--Hb_000056_250 Hb_000384_120 Hb_000384_120 Hb_003291_020--Hb_000384_120 Hb_003880_030 Hb_003880_030 Hb_003291_020--Hb_003880_030 Hb_003622_040 Hb_003622_040 Hb_000300_430--Hb_003622_040 Hb_004800_100 Hb_004800_100 Hb_000300_430--Hb_004800_100 Hb_000982_080 Hb_000982_080 Hb_000300_430--Hb_000982_080 Hb_011344_190 Hb_011344_190 Hb_000300_430--Hb_011344_190 Hb_000300_430--Hb_001123_160 Hb_000173_410 Hb_000173_410 Hb_000300_430--Hb_000173_410 Hb_008232_010--Hb_000982_080 Hb_008232_010--Hb_001123_160 Hb_008232_010--Hb_011344_190 Hb_004672_010 Hb_004672_010 Hb_008232_010--Hb_004672_010 Hb_008232_010--Hb_003622_040 Hb_015183_060 Hb_015183_060 Hb_008232_010--Hb_015183_060 Hb_001123_160--Hb_003622_040 Hb_001123_160--Hb_148209_010 Hb_000563_200 Hb_000563_200 Hb_001123_160--Hb_000563_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5844 8.68393 16.2547 49.9361 10.4054 16.8189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.4133 48.3634 42.5748 37.485 32.9896

CAGE analysis