Hb_003126_080

Information

Type -
Description -
Location Contig3126: 38863-43804
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05520g
description hypothetical protein
nr
ID XP_012088498.1
description PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JME2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25381 PE=4 SV=1
Gene Ontology
ID GO:0005488
description uncharacterized loc102591911

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33095: 38903-43829
cDNA
(Sanger)
(ID:Location)		 020_L09.ab1: 38903-41778

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003126_080 0.0 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
2 Hb_000656_400 0.0562989867 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
3 Hb_005993_040 0.0643115591 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
4 Hb_172632_090 0.0653909621 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
5 Hb_000205_160 0.0667734116 - - Peroxisome biogenesis protein 12 [Morus notabilis]
6 Hb_004491_010 0.0667822072 - - 60S ribosomal protein L51, putative [Ricinus communis]
7 Hb_004223_280 0.0718369238 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
8 Hb_001481_090 0.0724065834 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
9 Hb_002685_170 0.0732936793 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
10 Hb_007590_050 0.0735872426 - - NudC domain-containing protein, putative [Ricinus communis]
11 Hb_001766_110 0.074091549 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
12 Hb_000251_130 0.0743558877 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
13 Hb_000020_060 0.0758896392 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
14 Hb_001159_140 0.0765970539 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
15 Hb_000613_140 0.0774694887 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
16 Hb_003599_040 0.0775295819 - - unnamed protein product [Vitis vinifera]
17 Hb_000109_090 0.0779939285 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
18 Hb_028995_040 0.0782675549 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
19 Hb_000007_100 0.0782811929 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
20 Hb_001235_190 0.0783769936 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003126_080 Hb_003126_080 Hb_000656_400 Hb_000656_400 Hb_003126_080--Hb_000656_400 Hb_005993_040 Hb_005993_040 Hb_003126_080--Hb_005993_040 Hb_172632_090 Hb_172632_090 Hb_003126_080--Hb_172632_090 Hb_000205_160 Hb_000205_160 Hb_003126_080--Hb_000205_160 Hb_004491_010 Hb_004491_010 Hb_003126_080--Hb_004491_010 Hb_004223_280 Hb_004223_280 Hb_003126_080--Hb_004223_280 Hb_000920_180 Hb_000920_180 Hb_000656_400--Hb_000920_180 Hb_001226_160 Hb_001226_160 Hb_000656_400--Hb_001226_160 Hb_118707_030 Hb_118707_030 Hb_000656_400--Hb_118707_030 Hb_001259_090 Hb_001259_090 Hb_000656_400--Hb_001259_090 Hb_001766_110 Hb_001766_110 Hb_000656_400--Hb_001766_110 Hb_002043_190 Hb_002043_190 Hb_005993_040--Hb_002043_190 Hb_002928_130 Hb_002928_130 Hb_005993_040--Hb_002928_130 Hb_011571_020 Hb_011571_020 Hb_005993_040--Hb_011571_020 Hb_011360_140 Hb_011360_140 Hb_005993_040--Hb_011360_140 Hb_000392_440 Hb_000392_440 Hb_005993_040--Hb_000392_440 Hb_003615_010 Hb_003615_010 Hb_172632_090--Hb_003615_010 Hb_172632_090--Hb_005993_040 Hb_000251_130 Hb_000251_130 Hb_172632_090--Hb_000251_130 Hb_172632_090--Hb_001226_160 Hb_002311_350 Hb_002311_350 Hb_172632_090--Hb_002311_350 Hb_002284_240 Hb_002284_240 Hb_000205_160--Hb_002284_240 Hb_000205_160--Hb_004223_280 Hb_000720_120 Hb_000720_120 Hb_000205_160--Hb_000720_120 Hb_002081_130 Hb_002081_130 Hb_000205_160--Hb_002081_130 Hb_000926_250 Hb_000926_250 Hb_000205_160--Hb_000926_250 Hb_002685_170 Hb_002685_170 Hb_004491_010--Hb_002685_170 Hb_000853_420 Hb_000853_420 Hb_004491_010--Hb_000853_420 Hb_028995_040 Hb_028995_040 Hb_004491_010--Hb_028995_040 Hb_002603_120 Hb_002603_120 Hb_004491_010--Hb_002603_120 Hb_000041_270 Hb_000041_270 Hb_004491_010--Hb_000041_270 Hb_002137_020 Hb_002137_020 Hb_004223_280--Hb_002137_020 Hb_005357_030 Hb_005357_030 Hb_004223_280--Hb_005357_030 Hb_004223_280--Hb_002685_170 Hb_000613_140 Hb_000613_140 Hb_004223_280--Hb_000613_140 Hb_001477_130 Hb_001477_130 Hb_004223_280--Hb_001477_130 Hb_000510_130 Hb_000510_130 Hb_004223_280--Hb_000510_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.6358 37.8955 28.6822 24.3537 58.1648 57.7939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.7207 101.75 48.5496 49.013 19.122

CAGE analysis