Hb_003126_090

Information

Type -
Description -
Location Contig3126: 44840-48728
Sequence    

Annotation

kegg
ID pxb:103953460
description rac-like GTP-binding protein ARAC1
nr
ID AGL44364.1
description Rop1 [Hevea brasiliensis]
swissprot
ID Q38902
description Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=1 SV=1
trembl
ID T1RLN5
description Rop1 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description rac-like gtp-binding protein arac1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33097: 44846-48746 , PASA_asmbl_33098: 44852-47698
cDNA
(Sanger)
(ID:Location)		 005_E01.ab1: 44888-47963 , 021_N23.ab1: 44904-47937 , 028_D21.ab1: 44904-46283 , 029_E10.ab1: 44846-46452 , 036_O07.ab1: 44846-46433

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003126_090 0.0 - - Rop1 [Hevea brasiliensis]
2 Hb_033594_110 0.0626433213 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
3 Hb_000934_250 0.0682814932 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
4 Hb_001016_030 0.0692341163 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
5 Hb_001318_250 0.0828782052 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
6 Hb_065525_020 0.0862254166 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
7 Hb_002830_020 0.0874742935 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_002030_040 0.0892501981 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
9 Hb_000987_070 0.0893762937 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
10 Hb_010042_010 0.0906670428 - - Urease accessory protein ureD, putative [Ricinus communis]
11 Hb_000484_020 0.0915032941 - - hypothetical protein CISIN_1g030884mg [Citrus sinensis]
12 Hb_032202_090 0.0916160893 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
13 Hb_012022_120 0.0928368921 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
14 Hb_000201_120 0.0934832403 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
15 Hb_000995_040 0.0935642697 - - conserved hypothetical protein [Ricinus communis]
16 Hb_165132_010 0.09435727 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
17 Hb_029584_060 0.0945028987 - - Grave disease carrier protein, putative [Ricinus communis]
18 Hb_001814_070 0.0958813202 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
19 Hb_002105_090 0.0969146934 - - Rab4 [Hevea brasiliensis]
20 Hb_001279_310 0.0971324207 - - hypothetical protein JCGZ_10212 [Jatropha curcas]

Gene co-expression network

sample Hb_003126_090 Hb_003126_090 Hb_033594_110 Hb_033594_110 Hb_003126_090--Hb_033594_110 Hb_000934_250 Hb_000934_250 Hb_003126_090--Hb_000934_250 Hb_001016_030 Hb_001016_030 Hb_003126_090--Hb_001016_030 Hb_001318_250 Hb_001318_250 Hb_003126_090--Hb_001318_250 Hb_065525_020 Hb_065525_020 Hb_003126_090--Hb_065525_020 Hb_002830_020 Hb_002830_020 Hb_003126_090--Hb_002830_020 Hb_000630_060 Hb_000630_060 Hb_033594_110--Hb_000630_060 Hb_165132_010 Hb_165132_010 Hb_033594_110--Hb_165132_010 Hb_134949_020 Hb_134949_020 Hb_033594_110--Hb_134949_020 Hb_145880_030 Hb_145880_030 Hb_033594_110--Hb_145880_030 Hb_033594_110--Hb_001016_030 Hb_000934_250--Hb_001318_250 Hb_003581_150 Hb_003581_150 Hb_000934_250--Hb_003581_150 Hb_000934_250--Hb_065525_020 Hb_152784_010 Hb_152784_010 Hb_000934_250--Hb_152784_010 Hb_010042_010 Hb_010042_010 Hb_000934_250--Hb_010042_010 Hb_001140_370 Hb_001140_370 Hb_001016_030--Hb_001140_370 Hb_001616_040 Hb_001616_040 Hb_001016_030--Hb_001616_040 Hb_000201_120 Hb_000201_120 Hb_001016_030--Hb_000201_120 Hb_001421_060 Hb_001421_060 Hb_001016_030--Hb_001421_060 Hb_001016_030--Hb_002830_020 Hb_001124_090 Hb_001124_090 Hb_001318_250--Hb_001124_090 Hb_001318_250--Hb_152784_010 Hb_000317_390 Hb_000317_390 Hb_001318_250--Hb_000317_390 Hb_000103_320 Hb_000103_320 Hb_001318_250--Hb_000103_320 Hb_001318_250--Hb_001016_030 Hb_009773_020 Hb_009773_020 Hb_065525_020--Hb_009773_020 Hb_002030_040 Hb_002030_040 Hb_065525_020--Hb_002030_040 Hb_158467_010 Hb_158467_010 Hb_065525_020--Hb_158467_010 Hb_065525_020--Hb_010042_010 Hb_001105_070 Hb_001105_070 Hb_065525_020--Hb_001105_070 Hb_002431_050 Hb_002431_050 Hb_002830_020--Hb_002431_050 Hb_012022_120 Hb_012022_120 Hb_002830_020--Hb_012022_120 Hb_002864_050 Hb_002864_050 Hb_002830_020--Hb_002864_050 Hb_002830_020--Hb_000201_120 Hb_094608_010 Hb_094608_010 Hb_002830_020--Hb_094608_010 Hb_002830_020--Hb_003581_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.8192 18.5457 43.9209 69.0838 56.0283 72.3283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
152.099 124.347 63.1755 26.2799 24.5976

CAGE analysis