Hb_003126_100

Information

Type -
Description -
Location Contig3126: 50374-57926
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11280g
description hypothetical protein
nr
ID XP_006383071.1
description hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
swissprot
ID Q7X659
description Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana GN=VPS35A PE=1 SV=1
trembl
ID U5GBE7
description Vacuolar protein sorting-associated protein 35 OS=Populus trichocarpa GN=POPTR_0005s11280g PE=3 SV=1
Gene Ontology
ID GO:0030904
description vacuolar protein sorting-associated protein 35a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33099: 50319-57688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003126_100 0.0 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
2 Hb_002888_070 0.0577101606 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
3 Hb_000480_010 0.0614665671 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000002_490 0.0640719885 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
5 Hb_002749_110 0.0645950804 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
6 Hb_000914_080 0.0684838209 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_002093_030 0.0695516194 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
8 Hb_030827_030 0.07393588 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
9 Hb_003018_130 0.0751852575 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
10 Hb_008556_030 0.0762603099 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
11 Hb_000640_220 0.0781403308 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
12 Hb_007044_040 0.079235678 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
13 Hb_004994_040 0.0811637917 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
14 Hb_002942_050 0.0821366437 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
15 Hb_001341_120 0.0835668442 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
16 Hb_001102_080 0.0841571642 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
17 Hb_030131_040 0.0847850724 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
18 Hb_001427_190 0.0848451322 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
19 Hb_005408_020 0.0848849025 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000868_060 0.085627911 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]

Gene co-expression network

sample Hb_003126_100 Hb_003126_100 Hb_002888_070 Hb_002888_070 Hb_003126_100--Hb_002888_070 Hb_000480_010 Hb_000480_010 Hb_003126_100--Hb_000480_010 Hb_000002_490 Hb_000002_490 Hb_003126_100--Hb_000002_490 Hb_002749_110 Hb_002749_110 Hb_003126_100--Hb_002749_110 Hb_000914_080 Hb_000914_080 Hb_003126_100--Hb_000914_080 Hb_002093_030 Hb_002093_030 Hb_003126_100--Hb_002093_030 Hb_000868_060 Hb_000868_060 Hb_002888_070--Hb_000868_060 Hb_002888_070--Hb_000480_010 Hb_002888_070--Hb_000914_080 Hb_001102_080 Hb_001102_080 Hb_002888_070--Hb_001102_080 Hb_011930_080 Hb_011930_080 Hb_002888_070--Hb_011930_080 Hb_000480_010--Hb_001102_080 Hb_001341_120 Hb_001341_120 Hb_000480_010--Hb_001341_120 Hb_000480_010--Hb_000868_060 Hb_007044_040 Hb_007044_040 Hb_000480_010--Hb_007044_040 Hb_002311_070 Hb_002311_070 Hb_000002_490--Hb_002311_070 Hb_001050_010 Hb_001050_010 Hb_000002_490--Hb_001050_010 Hb_000933_020 Hb_000933_020 Hb_000002_490--Hb_000933_020 Hb_000718_070 Hb_000718_070 Hb_000002_490--Hb_000718_070 Hb_011618_080 Hb_011618_080 Hb_000002_490--Hb_011618_080 Hb_000152_260 Hb_000152_260 Hb_002749_110--Hb_000152_260 Hb_002749_110--Hb_002093_030 Hb_001473_090 Hb_001473_090 Hb_002749_110--Hb_001473_090 Hb_001599_030 Hb_001599_030 Hb_002749_110--Hb_001599_030 Hb_000107_400 Hb_000107_400 Hb_002749_110--Hb_000107_400 Hb_000329_130 Hb_000329_130 Hb_000914_080--Hb_000329_130 Hb_009151_020 Hb_009151_020 Hb_000914_080--Hb_009151_020 Hb_017895_020 Hb_017895_020 Hb_000914_080--Hb_017895_020 Hb_005408_020 Hb_005408_020 Hb_000914_080--Hb_005408_020 Hb_022693_030 Hb_022693_030 Hb_002093_030--Hb_022693_030 Hb_002093_030--Hb_000152_260 Hb_008556_030 Hb_008556_030 Hb_002093_030--Hb_008556_030 Hb_001828_160 Hb_001828_160 Hb_002093_030--Hb_001828_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.3969 17.7319 28.3575 18.7234 50.0445 41.0763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3231 14.2515 16.3599 18.3164 16.9569

CAGE analysis