Hb_003141_020

Information

Type -
Description -
Location Contig3141: 37576-38954
Sequence    

Annotation

kegg
ID rcu:RCOM_0990280
description Chlorophyllase-1, putative (EC:3.1.1.14)
nr
ID XP_012092481.1
description PREDICTED: chlorophyllase-1-like [Jatropha curcas]
swissprot
ID O22527
description Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1
trembl
ID A0A067JF51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21879 PE=4 SV=1
Gene Ontology
ID GO:0047746
description chlorophyllase- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003141_020 0.0 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
2 Hb_041362_010 0.1284448775 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
3 Hb_000069_050 0.1568641602 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
4 Hb_000836_400 0.1597699375 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1 [Jatropha curcas]
5 Hb_015146_010 0.1678889087 - - -
6 Hb_078903_010 0.1696417158 - - Osmotin precursor, putative [Ricinus communis]
7 Hb_001652_060 0.1705442987 - - PREDICTED: uncharacterized protein LOC103404034 [Malus domestica]
8 Hb_123560_010 0.1707861486 - - hypothetical protein JCGZ_12463 [Jatropha curcas]
9 Hb_005563_020 0.174671846 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
10 Hb_002184_040 0.1759408205 transcription factor TF Family: bHLH transcription factor, putative [Ricinus communis]
11 Hb_001142_040 0.1763380619 - - PREDICTED: protein YLS9 [Jatropha curcas]
12 Hb_010697_030 0.1775128338 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
13 Hb_003857_010 0.1782081433 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000352_080 0.1798751928 - - PREDICTED: lipid transfer-like protein VAS [Jatropha curcas]
15 Hb_007926_020 0.1809554366 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
16 Hb_002311_240 0.1833514065 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
17 Hb_012136_010 0.1849051752 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
18 Hb_005066_060 0.1851078473 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
19 Hb_001699_240 0.1853482492 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
20 Hb_003891_060 0.1886189119 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]

Gene co-expression network

sample Hb_003141_020 Hb_003141_020 Hb_041362_010 Hb_041362_010 Hb_003141_020--Hb_041362_010 Hb_000069_050 Hb_000069_050 Hb_003141_020--Hb_000069_050 Hb_000836_400 Hb_000836_400 Hb_003141_020--Hb_000836_400 Hb_015146_010 Hb_015146_010 Hb_003141_020--Hb_015146_010 Hb_078903_010 Hb_078903_010 Hb_003141_020--Hb_078903_010 Hb_001652_060 Hb_001652_060 Hb_003141_020--Hb_001652_060 Hb_012136_010 Hb_012136_010 Hb_041362_010--Hb_012136_010 Hb_005066_060 Hb_005066_060 Hb_041362_010--Hb_005066_060 Hb_006533_010 Hb_006533_010 Hb_041362_010--Hb_006533_010 Hb_005563_020 Hb_005563_020 Hb_041362_010--Hb_005563_020 Hb_119748_010 Hb_119748_010 Hb_041362_010--Hb_119748_010 Hb_000069_050--Hb_000836_400 Hb_000631_130 Hb_000631_130 Hb_000069_050--Hb_000631_130 Hb_000038_090 Hb_000038_090 Hb_000069_050--Hb_000038_090 Hb_007044_070 Hb_007044_070 Hb_000069_050--Hb_007044_070 Hb_010697_030 Hb_010697_030 Hb_000069_050--Hb_010697_030 Hb_008775_050 Hb_008775_050 Hb_000069_050--Hb_008775_050 Hb_000836_400--Hb_015146_010 Hb_000836_400--Hb_010697_030 Hb_005614_040 Hb_005614_040 Hb_000836_400--Hb_005614_040 Hb_007483_040 Hb_007483_040 Hb_000836_400--Hb_007483_040 Hb_000059_100 Hb_000059_100 Hb_000836_400--Hb_000059_100 Hb_185391_010 Hb_185391_010 Hb_015146_010--Hb_185391_010 Hb_000127_250 Hb_000127_250 Hb_015146_010--Hb_000127_250 Hb_015146_010--Hb_005614_040 Hb_000958_180 Hb_000958_180 Hb_015146_010--Hb_000958_180 Hb_012532_020 Hb_012532_020 Hb_015146_010--Hb_012532_020 Hb_123560_010 Hb_123560_010 Hb_078903_010--Hb_123560_010 Hb_078903_010--Hb_001652_060 Hb_078903_010--Hb_005563_020 Hb_002184_040 Hb_002184_040 Hb_078903_010--Hb_002184_040 Hb_001142_040 Hb_001142_040 Hb_078903_010--Hb_001142_040 Hb_003857_010 Hb_003857_010 Hb_078903_010--Hb_003857_010 Hb_001652_060--Hb_002184_040 Hb_001652_060--Hb_001142_040 Hb_001652_060--Hb_003857_010 Hb_001652_060--Hb_123560_010 Hb_007926_020 Hb_007926_020 Hb_001652_060--Hb_007926_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0167559 0.370811 0.0412134 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0383164 0.150706 0 3.76392 0

CAGE analysis