Hb_003141_070

Information

Type -
Description -
Location Contig3141: 68282-70361
Sequence    

Annotation

kegg
ID vvi:100240942
description probable protein phosphatase 2C 51
nr
ID XP_012092163.1
description PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
swissprot
ID Q93YS2
description Probable protein phosphatase 2C 51 OS=Arabidopsis thaliana GN=At3g63340 PE=2 SV=2
trembl
ID A0A067JC26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21872 PE=3 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 51 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33193: 62192-67679 , PASA_asmbl_33194: 68243-70577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003141_070 0.0 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
2 Hb_004935_060 0.0738253003 - - Uncharacterized protein isoform 2 [Theobroma cacao]
3 Hb_002304_040 0.0775661393 - - PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
4 Hb_002735_050 0.0902661336 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
5 Hb_025098_010 0.0991925498 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_005144_050 0.1001369924 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
7 Hb_003529_030 0.1014856837 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
8 Hb_185255_010 0.104375559 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
9 Hb_001024_020 0.1048981899 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
10 Hb_003697_050 0.1050609189 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
11 Hb_004129_140 0.1053517034 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Jatropha curcas]
12 Hb_002043_040 0.1105777462 - - PREDICTED: uncharacterized protein LOC105631509 [Jatropha curcas]
13 Hb_002289_080 0.1134953683 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
14 Hb_002481_060 0.1219193502 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
15 Hb_002284_230 0.1233196122 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
16 Hb_001307_030 0.1248239387 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
17 Hb_027380_220 0.1251870595 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
18 Hb_086085_020 0.1255321759 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
19 Hb_001018_110 0.1257000353 - - unnamed protein product [Coffea canephora]
20 Hb_000300_630 0.1267446134 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]

Gene co-expression network

sample Hb_003141_070 Hb_003141_070 Hb_004935_060 Hb_004935_060 Hb_003141_070--Hb_004935_060 Hb_002304_040 Hb_002304_040 Hb_003141_070--Hb_002304_040 Hb_002735_050 Hb_002735_050 Hb_003141_070--Hb_002735_050 Hb_025098_010 Hb_025098_010 Hb_003141_070--Hb_025098_010 Hb_005144_050 Hb_005144_050 Hb_003141_070--Hb_005144_050 Hb_003529_030 Hb_003529_030 Hb_003141_070--Hb_003529_030 Hb_004935_060--Hb_002735_050 Hb_004935_060--Hb_005144_050 Hb_003697_050 Hb_003697_050 Hb_004935_060--Hb_003697_050 Hb_002289_080 Hb_002289_080 Hb_004935_060--Hb_002289_080 Hb_004935_060--Hb_025098_010 Hb_004129_140 Hb_004129_140 Hb_002304_040--Hb_004129_140 Hb_000300_630 Hb_000300_630 Hb_002304_040--Hb_000300_630 Hb_001024_020 Hb_001024_020 Hb_002304_040--Hb_001024_020 Hb_001482_040 Hb_001482_040 Hb_002304_040--Hb_001482_040 Hb_006618_120 Hb_006618_120 Hb_002304_040--Hb_006618_120 Hb_002735_050--Hb_003697_050 Hb_002735_050--Hb_002289_080 Hb_002284_230 Hb_002284_230 Hb_002735_050--Hb_002284_230 Hb_002735_050--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_025098_010--Hb_185255_010 Hb_000310_090 Hb_000310_090 Hb_025098_010--Hb_000310_090 Hb_001307_030 Hb_001307_030 Hb_025098_010--Hb_001307_030 Hb_025098_010--Hb_005144_050 Hb_025098_010--Hb_002289_080 Hb_008841_020 Hb_008841_020 Hb_025098_010--Hb_008841_020 Hb_001366_180 Hb_001366_180 Hb_005144_050--Hb_001366_180 Hb_005144_050--Hb_185255_010 Hb_005144_050--Hb_002289_080 Hb_000289_110 Hb_000289_110 Hb_005144_050--Hb_000289_110 Hb_024128_020 Hb_024128_020 Hb_005144_050--Hb_024128_020 Hb_000258_240 Hb_000258_240 Hb_003529_030--Hb_000258_240 Hb_000917_130 Hb_000917_130 Hb_003529_030--Hb_000917_130 Hb_000477_100 Hb_000477_100 Hb_003529_030--Hb_000477_100 Hb_000060_050 Hb_000060_050 Hb_003529_030--Hb_000060_050 Hb_003529_030--Hb_004129_140 Hb_005504_050 Hb_005504_050 Hb_003529_030--Hb_005504_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.87885 1.26897 1.45836 8.78636 2.71694 4.57404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.47762 4.74795 5.03359 3.03491 6.12114

CAGE analysis