Hb_003142_020

Information

Type -
Description -
Location Contig3142: 8444-17603
Sequence    

Annotation

kegg
ID rcu:RCOM_1579370
description hypothetical protein
nr
ID XP_012090075.1
description PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JE98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25978 PE=4 SV=1
Gene Ontology
ID GO:1902589
description dentin sialophosphoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33200: 8567-17559 , PASA_asmbl_33201: 13471-16622
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003142_020 0.0 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
2 Hb_000227_120 0.0524868866 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001007_060 0.0620208499 - - Transcriptional corepressor SEUSS [Glycine soja]
4 Hb_002725_120 0.0688594376 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
5 Hb_003291_010 0.0714132145 - - ATP-dependent protease La, putative [Ricinus communis]
6 Hb_003106_060 0.074308095 - - hypothetical protein POPTR_0015s08140g [Populus trichocarpa]
7 Hb_009767_110 0.0762175716 - - -
8 Hb_000574_390 0.0775856264 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
9 Hb_000928_210 0.0785316396 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
10 Hb_005463_100 0.0790321179 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
11 Hb_006915_050 0.083266683 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
12 Hb_002110_150 0.0834714968 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
13 Hb_000684_470 0.0841264236 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
14 Hb_007441_200 0.0857194356 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
15 Hb_013405_030 0.0899653345 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005496_130 0.0914297674 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
17 Hb_001198_100 0.0914361803 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
18 Hb_003371_090 0.0915277849 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
19 Hb_002660_010 0.091889098 transcription factor TF Family: ARF PREDICTED: auxin response factor 18-like [Jatropha curcas]
20 Hb_015198_020 0.0920253222 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003142_020 Hb_003142_020 Hb_000227_120 Hb_000227_120 Hb_003142_020--Hb_000227_120 Hb_001007_060 Hb_001007_060 Hb_003142_020--Hb_001007_060 Hb_002725_120 Hb_002725_120 Hb_003142_020--Hb_002725_120 Hb_003291_010 Hb_003291_010 Hb_003142_020--Hb_003291_010 Hb_003106_060 Hb_003106_060 Hb_003142_020--Hb_003106_060 Hb_009767_110 Hb_009767_110 Hb_003142_020--Hb_009767_110 Hb_000227_120--Hb_003106_060 Hb_000684_470 Hb_000684_470 Hb_000227_120--Hb_000684_470 Hb_002660_010 Hb_002660_010 Hb_000227_120--Hb_002660_010 Hb_000227_120--Hb_003291_010 Hb_009382_010 Hb_009382_010 Hb_000227_120--Hb_009382_010 Hb_003057_110 Hb_003057_110 Hb_001007_060--Hb_003057_110 Hb_004143_130 Hb_004143_130 Hb_001007_060--Hb_004143_130 Hb_000574_390 Hb_000574_390 Hb_001007_060--Hb_000574_390 Hb_001007_060--Hb_003106_060 Hb_006915_050 Hb_006915_050 Hb_001007_060--Hb_006915_050 Hb_002725_120--Hb_009767_110 Hb_006649_050 Hb_006649_050 Hb_002725_120--Hb_006649_050 Hb_000291_050 Hb_000291_050 Hb_002725_120--Hb_000291_050 Hb_005496_130 Hb_005496_130 Hb_002725_120--Hb_005496_130 Hb_000165_250 Hb_000165_250 Hb_002725_120--Hb_000165_250 Hb_001486_180 Hb_001486_180 Hb_003291_010--Hb_001486_180 Hb_000977_110 Hb_000977_110 Hb_003291_010--Hb_000977_110 Hb_001318_270 Hb_001318_270 Hb_003291_010--Hb_001318_270 Hb_003688_150 Hb_003688_150 Hb_003291_010--Hb_003688_150 Hb_007441_200 Hb_007441_200 Hb_003106_060--Hb_007441_200 Hb_003226_180 Hb_003226_180 Hb_003106_060--Hb_003226_180 Hb_003464_060 Hb_003464_060 Hb_003106_060--Hb_003464_060 Hb_000329_470 Hb_000329_470 Hb_003106_060--Hb_000329_470 Hb_044728_010 Hb_044728_010 Hb_009767_110--Hb_044728_010 Hb_009767_110--Hb_006649_050 Hb_001198_100 Hb_001198_100 Hb_009767_110--Hb_001198_100 Hb_008554_130 Hb_008554_130 Hb_009767_110--Hb_008554_130 Hb_009767_110--Hb_000684_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2463 15.3385 7.02497 8.18315 14.1728 17.097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4897 18.6682 27.3449 11.7524 18.37

CAGE analysis