Hb_003142_080

Information

Type -
Description -
Location Contig3142: 78738-116176
Sequence    

Annotation

kegg
ID rcu:RCOM_1579660
description receptor serine/threonine kinase, putative (EC:2.7.10.2)
nr
ID XP_002513559.1
description receptor serine/threonine kinase, putative [Ricinus communis]
swissprot
ID D7SFH9
description Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 OS=Arabidopsis thaliana GN=GDPDL2 PE=1 SV=1
trembl
ID B9RIJ0
description Receptor serine/threonine kinase, putative OS=Ricinus communis GN=RCOM_1579660 PE=3 SV=1
Gene Ontology
ID GO:0004672
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003142_080 0.0 - - receptor serine/threonine kinase, putative [Ricinus communis]
2 Hb_006198_040 0.0775943067 - - conserved hypothetical protein [Ricinus communis]
3 Hb_185474_020 0.0785322449 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
4 Hb_124579_020 0.0859243753 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
5 Hb_000033_010 0.0886508525 - - Protein MLO, putative [Ricinus communis]
6 Hb_002635_010 0.0923275548 - - homogentisate phytyl transferase [Hevea brasiliensis]
7 Hb_029223_010 0.0935383172 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
8 Hb_000130_480 0.0936856789 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
9 Hb_010311_020 0.1025364875 - - lrr receptor protein kinase, putative [Ricinus communis]
10 Hb_001652_130 0.1026894759 - - hypothetical protein B456_002G193900 [Gossypium raimondii]
11 Hb_008461_070 0.1088772235 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
12 Hb_000836_030 0.1140206179 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
13 Hb_167211_010 0.1164976364 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
14 Hb_000380_140 0.1190323018 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
15 Hb_188075_010 0.1193628434 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
16 Hb_004724_260 0.1238634068 - - PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]
17 Hb_002636_070 0.1253248866 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
18 Hb_002615_080 0.1258181362 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
19 Hb_000416_010 0.1261325768 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
20 Hb_082550_010 0.1264625722 - - hypothetical protein CISIN_1g0081081mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_003142_080 Hb_003142_080 Hb_006198_040 Hb_006198_040 Hb_003142_080--Hb_006198_040 Hb_185474_020 Hb_185474_020 Hb_003142_080--Hb_185474_020 Hb_124579_020 Hb_124579_020 Hb_003142_080--Hb_124579_020 Hb_000033_010 Hb_000033_010 Hb_003142_080--Hb_000033_010 Hb_002635_010 Hb_002635_010 Hb_003142_080--Hb_002635_010 Hb_029223_010 Hb_029223_010 Hb_003142_080--Hb_029223_010 Hb_000130_480 Hb_000130_480 Hb_006198_040--Hb_000130_480 Hb_006198_040--Hb_185474_020 Hb_006198_040--Hb_000033_010 Hb_006198_040--Hb_124579_020 Hb_000836_030 Hb_000836_030 Hb_006198_040--Hb_000836_030 Hb_010311_020 Hb_010311_020 Hb_185474_020--Hb_010311_020 Hb_000380_140 Hb_000380_140 Hb_185474_020--Hb_000380_140 Hb_001652_130 Hb_001652_130 Hb_185474_020--Hb_001652_130 Hb_185474_020--Hb_124579_020 Hb_124579_020--Hb_010311_020 Hb_124579_020--Hb_000130_480 Hb_000416_010 Hb_000416_010 Hb_124579_020--Hb_000416_010 Hb_124579_020--Hb_002635_010 Hb_000033_010--Hb_001652_130 Hb_002636_070 Hb_002636_070 Hb_000033_010--Hb_002636_070 Hb_004724_260 Hb_004724_260 Hb_000033_010--Hb_004724_260 Hb_000033_010--Hb_029223_010 Hb_002635_010--Hb_000130_480 Hb_002635_010--Hb_000380_140 Hb_004607_160 Hb_004607_160 Hb_002635_010--Hb_004607_160 Hb_007850_110 Hb_007850_110 Hb_002635_010--Hb_007850_110 Hb_016924_010 Hb_016924_010 Hb_029223_010--Hb_016924_010 Hb_029223_010--Hb_002636_070 Hb_000705_040 Hb_000705_040 Hb_029223_010--Hb_000705_040 Hb_000270_640 Hb_000270_640 Hb_029223_010--Hb_000270_640 Hb_029223_010--Hb_000836_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.425713 0.725367 0.993021 0.0139735 0.0128003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0163379 0 0 0.750415 2.48776

CAGE analysis