Hb_003144_010

Information

Type -
Description -
Location Contig3144: 21958-22210
Sequence    

Annotation

kegg
ID rcu:RCOM_1733650
description (R)-limonene synthase, putative (EC:4.2.3.20)
nr
ID XP_012075360.1
description PREDICTED: terpene synthase 10-like [Jatropha curcas]
swissprot
ID Q93X23
description Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1
trembl
ID A0A067KK14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09482 PE=4 SV=1
Gene Ontology
ID GO:0010334
description terpene synthase cyclase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003144_010 0.0 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
2 Hb_001081_050 0.1375943569 - - hypothetical protein POPTR_0001s07860g [Populus trichocarpa]
3 Hb_184798_060 0.142217566 - - conserved hypothetical protein [Ricinus communis]
4 Hb_174230_010 0.1522517989 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
5 Hb_006495_030 0.1643294593 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
6 Hb_001136_050 0.1649784206 - - -
7 Hb_003053_100 0.1716725697 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]
8 Hb_001511_040 0.1742896535 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
9 Hb_002421_170 0.1751908896 - - hypothetical protein POPTR_0003s18240g [Populus trichocarpa]
10 Hb_000692_240 0.1754583331 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
11 Hb_084849_030 0.1755601331 - - PREDICTED: uncharacterized protein LOC105634080 isoform X1 [Jatropha curcas]
12 Hb_020327_010 0.1759413048 - - PREDICTED: uncharacterized protein LOC104886355, partial [Beta vulgaris subsp. vulgaris]
13 Hb_000648_090 0.1763295697 - - -
14 Hb_049187_010 0.1766504621 - - hypothetical protein, partial [Pseudomonas fluorescens]
15 Hb_003362_050 0.1768502826 - - PREDICTED: probable sucrose-phosphate synthase 3 [Jatropha curcas]
16 Hb_006435_020 0.1780790541 - - sugar transporter, putative [Ricinus communis]
17 Hb_035265_020 0.17829798 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_001338_090 0.1798229782 - - hypothetical protein VITISV_009275 [Vitis vinifera]
19 Hb_161881_010 0.1815996721 - - laccase, putative [Ricinus communis]
20 Hb_177343_020 0.1820145171 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]

Gene co-expression network

sample Hb_003144_010 Hb_003144_010 Hb_001081_050 Hb_001081_050 Hb_003144_010--Hb_001081_050 Hb_184798_060 Hb_184798_060 Hb_003144_010--Hb_184798_060 Hb_174230_010 Hb_174230_010 Hb_003144_010--Hb_174230_010 Hb_006495_030 Hb_006495_030 Hb_003144_010--Hb_006495_030 Hb_001136_050 Hb_001136_050 Hb_003144_010--Hb_001136_050 Hb_003053_100 Hb_003053_100 Hb_003144_010--Hb_003053_100 Hb_001081_050--Hb_184798_060 Hb_027638_010 Hb_027638_010 Hb_001081_050--Hb_027638_010 Hb_000208_220 Hb_000208_220 Hb_001081_050--Hb_000208_220 Hb_161881_010 Hb_161881_010 Hb_001081_050--Hb_161881_010 Hb_004407_030 Hb_004407_030 Hb_001081_050--Hb_004407_030 Hb_001761_160 Hb_001761_160 Hb_184798_060--Hb_001761_160 Hb_184798_060--Hb_000208_220 Hb_002553_030 Hb_002553_030 Hb_184798_060--Hb_002553_030 Hb_003414_020 Hb_003414_020 Hb_184798_060--Hb_003414_020 Hb_174230_010--Hb_006495_030 Hb_020327_010 Hb_020327_010 Hb_174230_010--Hb_020327_010 Hb_000692_240 Hb_000692_240 Hb_174230_010--Hb_000692_240 Hb_049187_010 Hb_049187_010 Hb_174230_010--Hb_049187_010 Hb_002040_070 Hb_002040_070 Hb_174230_010--Hb_002040_070 Hb_001511_040 Hb_001511_040 Hb_174230_010--Hb_001511_040 Hb_006040_090 Hb_006040_090 Hb_006495_030--Hb_006040_090 Hb_006495_030--Hb_003053_100 Hb_006495_030--Hb_002040_070 Hb_001210_110 Hb_001210_110 Hb_006495_030--Hb_001210_110 Hb_003053_090 Hb_003053_090 Hb_006495_030--Hb_003053_090 Hb_000853_280 Hb_000853_280 Hb_006495_030--Hb_000853_280 Hb_001136_050--Hb_174230_010 Hb_009572_010 Hb_009572_010 Hb_001136_050--Hb_009572_010 Hb_084849_030 Hb_084849_030 Hb_001136_050--Hb_084849_030 Hb_001195_700 Hb_001195_700 Hb_001136_050--Hb_001195_700 Hb_001136_050--Hb_049187_010 Hb_003053_100--Hb_006040_090 Hb_007933_010 Hb_007933_010 Hb_003053_100--Hb_007933_010 Hb_003053_100--Hb_000853_280 Hb_003053_100--Hb_001210_110 Hb_007741_060 Hb_007741_060 Hb_003053_100--Hb_007741_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.12034 3.29184 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.817033 0 0 0 27.3982

CAGE analysis