Hb_003147_040

Information

Type -
Description -
Location Contig3147: 31499-31990
Sequence    

Annotation

kegg
ID rcu:RCOM_1326590
description Calmodulin, putative (EC:1.3.1.74)
nr
ID XP_012070221.1
description PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
swissprot
ID Q9M8U1
description Probable calcium-binding protein CML18 OS=Arabidopsis thaliana GN=CML18 PE=1 SV=1
trembl
ID A0A067L4T3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02535 PE=4 SV=1
Gene Ontology
ID GO:0000325
description probable calcium-binding protein cml18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33228: 31138-31450
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003147_040 0.0 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
2 Hb_000659_040 0.0925410364 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
3 Hb_002095_020 0.1038524844 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
4 Hb_001369_390 0.1093919368 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
5 Hb_002902_070 0.1241155078 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
6 Hb_000473_100 0.1244466687 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
7 Hb_000868_130 0.124914217 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
8 Hb_000069_540 0.1254088752 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
9 Hb_000290_030 0.126050885 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
10 Hb_028227_040 0.1262782288 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
11 Hb_006355_060 0.1268393433 - - PREDICTED: transcription factor PIF1-like isoform X2 [Jatropha curcas]
12 Hb_001046_030 0.1276735589 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_001318_100 0.1287759492 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
14 Hb_000856_200 0.1292160146 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
15 Hb_000429_160 0.130244453 - - PREDICTED: uncharacterized protein LOC105645177 [Jatropha curcas]
16 Hb_017358_020 0.1317981369 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
17 Hb_003097_220 0.1322607576 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
18 Hb_001417_060 0.1326588286 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
19 Hb_010222_040 0.1344333921 - - PREDICTED: kinesin-2 [Jatropha curcas]
20 Hb_144449_010 0.136449891 - - Potassium transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_003147_040 Hb_003147_040 Hb_000659_040 Hb_000659_040 Hb_003147_040--Hb_000659_040 Hb_002095_020 Hb_002095_020 Hb_003147_040--Hb_002095_020 Hb_001369_390 Hb_001369_390 Hb_003147_040--Hb_001369_390 Hb_002902_070 Hb_002902_070 Hb_003147_040--Hb_002902_070 Hb_000473_100 Hb_000473_100 Hb_003147_040--Hb_000473_100 Hb_000868_130 Hb_000868_130 Hb_003147_040--Hb_000868_130 Hb_000363_250 Hb_000363_250 Hb_000659_040--Hb_000363_250 Hb_000272_030 Hb_000272_030 Hb_000659_040--Hb_000272_030 Hb_001318_100 Hb_001318_100 Hb_000659_040--Hb_001318_100 Hb_000856_200 Hb_000856_200 Hb_000659_040--Hb_000856_200 Hb_007894_070 Hb_007894_070 Hb_000659_040--Hb_007894_070 Hb_002095_020--Hb_001369_390 Hb_003266_010 Hb_003266_010 Hb_002095_020--Hb_003266_010 Hb_002095_020--Hb_000868_130 Hb_004374_030 Hb_004374_030 Hb_002095_020--Hb_004374_030 Hb_004204_220 Hb_004204_220 Hb_002095_020--Hb_004204_220 Hb_000784_060 Hb_000784_060 Hb_002095_020--Hb_000784_060 Hb_001369_390--Hb_000784_060 Hb_001369_390--Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_001369_390--Hb_016277_030 Hb_000836_030 Hb_000836_030 Hb_001369_390--Hb_000836_030 Hb_001046_030 Hb_001046_030 Hb_001369_390--Hb_001046_030 Hb_000069_540 Hb_000069_540 Hb_002902_070--Hb_000069_540 Hb_002902_070--Hb_000868_130 Hb_001305_020 Hb_001305_020 Hb_002902_070--Hb_001305_020 Hb_000427_040 Hb_000427_040 Hb_002902_070--Hb_000427_040 Hb_000834_100 Hb_000834_100 Hb_002902_070--Hb_000834_100 Hb_144703_010 Hb_144703_010 Hb_002902_070--Hb_144703_010 Hb_000473_100--Hb_000868_130 Hb_144449_010 Hb_144449_010 Hb_000473_100--Hb_144449_010 Hb_002902_040 Hb_002902_040 Hb_000473_100--Hb_002902_040 Hb_000473_100--Hb_000069_540 Hb_001269_400 Hb_001269_400 Hb_000473_100--Hb_001269_400 Hb_000473_100--Hb_000856_200 Hb_000868_130--Hb_001046_030 Hb_017358_020 Hb_017358_020 Hb_000868_130--Hb_017358_020 Hb_000868_130--Hb_000069_540 Hb_000868_130--Hb_003266_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0588246 2.00657 2.27344 5.03651 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.108281 0.182823 1.17217 4.63887

CAGE analysis