Hb_003147_050

Information

Type -
Description -
Location Contig3147: 32881-35865
Sequence    

Annotation

kegg
ID rcu:RCOM_1326600
description nucleic acid binding protein, putative
nr
ID XP_002520047.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q9LFD5
description Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1
trembl
ID B9S228
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1326600 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33230: 32866-35878 , PASA_asmbl_33232: 34838-35082
cDNA
(Sanger)
(ID:Location)		 013_H20.ab1: 33353-35878 , 016_P19.ab1: 33278-35796 , 025_L02.ab1: 33174-35796 , 028_C18.ab1: 33339-35878 , 049_E23.ab1: 33464-35854

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003147_050 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_001538_140 0.0797086602 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
3 Hb_002078_460 0.0950112098 - - -
4 Hb_002290_040 0.0977236217 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000162_140 0.1030937228 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
6 Hb_005839_110 0.1082650857 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
7 Hb_003929_120 0.1093734565 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
8 Hb_001862_100 0.1162173112 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
9 Hb_001762_060 0.1170316288 - - pantothenate kinase, putative [Ricinus communis]
10 Hb_002603_160 0.1177812721 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
11 Hb_000976_360 0.1194012295 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
12 Hb_001427_230 0.1197649702 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002756_020 0.1226331889 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
14 Hb_000363_200 0.1237910618 - - 40S ribosomal protein S8, putative [Ricinus communis]
15 Hb_005701_010 0.1253957781 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
16 Hb_001278_050 0.1258270224 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
17 Hb_001575_020 0.12585395 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001616_060 0.1279574773 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
19 Hb_000061_300 0.1283765202 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
20 Hb_003938_180 0.1290463078 - - lesion inducing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003147_050 Hb_003147_050 Hb_001538_140 Hb_001538_140 Hb_003147_050--Hb_001538_140 Hb_002078_460 Hb_002078_460 Hb_003147_050--Hb_002078_460 Hb_002290_040 Hb_002290_040 Hb_003147_050--Hb_002290_040 Hb_000162_140 Hb_000162_140 Hb_003147_050--Hb_000162_140 Hb_005839_110 Hb_005839_110 Hb_003147_050--Hb_005839_110 Hb_003929_120 Hb_003929_120 Hb_003147_050--Hb_003929_120 Hb_000432_050 Hb_000432_050 Hb_001538_140--Hb_000432_050 Hb_001538_140--Hb_002290_040 Hb_005614_050 Hb_005614_050 Hb_001538_140--Hb_005614_050 Hb_000363_200 Hb_000363_200 Hb_001538_140--Hb_000363_200 Hb_001538_140--Hb_002078_460 Hb_001616_060 Hb_001616_060 Hb_002078_460--Hb_001616_060 Hb_002028_130 Hb_002028_130 Hb_002078_460--Hb_002028_130 Hb_001278_050 Hb_001278_050 Hb_002078_460--Hb_001278_050 Hb_007382_150 Hb_007382_150 Hb_002078_460--Hb_007382_150 Hb_000865_070 Hb_000865_070 Hb_002078_460--Hb_000865_070 Hb_000032_220 Hb_000032_220 Hb_002078_460--Hb_000032_220 Hb_002756_020 Hb_002756_020 Hb_002290_040--Hb_002756_020 Hb_004429_070 Hb_004429_070 Hb_002290_040--Hb_004429_070 Hb_001959_160 Hb_001959_160 Hb_002290_040--Hb_001959_160 Hb_003943_030 Hb_003943_030 Hb_002290_040--Hb_003943_030 Hb_001153_220 Hb_001153_220 Hb_002290_040--Hb_001153_220 Hb_000162_140--Hb_005839_110 Hb_002659_040 Hb_002659_040 Hb_000162_140--Hb_002659_040 Hb_000162_140--Hb_001616_060 Hb_000162_140--Hb_003929_120 Hb_000162_140--Hb_002078_460 Hb_000061_300 Hb_000061_300 Hb_005839_110--Hb_000061_300 Hb_005839_110--Hb_003929_120 Hb_001575_020 Hb_001575_020 Hb_005839_110--Hb_001575_020 Hb_005839_110--Hb_000432_050 Hb_003929_120--Hb_001575_020 Hb_000069_100 Hb_000069_100 Hb_003929_120--Hb_000069_100 Hb_003929_120--Hb_001616_060 Hb_003929_120--Hb_007382_150 Hb_003938_180 Hb_003938_180 Hb_003929_120--Hb_003938_180 Hb_000224_090 Hb_000224_090 Hb_003929_120--Hb_000224_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.9223 33.6798 20.3802 40.2519 84.7426 201.129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
336.262 305.636 509.579 145.79 47.9193

CAGE analysis